View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_high_1 (Length: 711)
Name: NF17556_high_1
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 17 - 700
Target Start/End: Original strand, 54794196 - 54794880
Alignment:
| Q |
17 |
aagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactcttgtcgggggcagcattaaataatatgctaatttaggtttata |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
54794196 |
aagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactcttgtcaggggcagcattaaataatatactaatttaggtttata |
54794295 |
T |
|
| Q |
117 |
ttgaaagtcgtctaatatctaattagttaatagcttaatagtgcattttaattcaatacaacaatctactctacgggnnnnnnnnnn-atgaacaatgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54794296 |
ttgaaagtcgtctaatatctaattagttaatagcttaatagtgcattttaattcaatacaacaatctactctacggttttttttttttatgaacaatgaa |
54794395 |
T |
|
| Q |
216 |
atgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagtttataa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794396 |
atgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagtttataa |
54794495 |
T |
|
| Q |
316 |
gttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaactg |
415 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54794496 |
gttaaactagtagctaatagactatagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagtaagcgagctaactg |
54794595 |
T |
|
| Q |
416 |
atcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
54794596 |
atcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactaatttacaagtttgtcaaataagataagtctatgtcaaa |
54794695 |
T |
|
| Q |
516 |
caaactcaagcttcacacctgacctatgttgatgctcctgtgctatgcaatcactgcatcaaaaggtatttggtttgttagaccttgagcctttcaattg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54794696 |
caaactcaagcttcacacctgacctatgttgatgctcctgtgctatgcaatcactgcatcaaaaggtatttggtttgttagaccttgagcctttcaattg |
54794795 |
T |
|
| Q |
616 |
ttcctgtctatcatggataattttgaaaagcaaatgatggaaaatcaaacaatgactgatataatgcaccccgttccatattctt |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794796 |
ttcctgtctatcatggataattttgaaaagcaaatgatggaaaatcaaacaatgactgatataatgcaccccgttccatattctt |
54794880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 52286877 - 52287320
Alignment:
| Q |
17 |
aagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactcttgtcgggggcagcattaaataat--------atgctaattta |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
52286877 |
aagaatgacatggtaacccagttgcaatcataggcacatgtaacaacttttagactcttgtcgggtgcagcattaaataattaaataatatactaattta |
52286976 |
T |
|
| Q |
109 |
ggtttatattgaaagtcgtctaatatcta--------------attagttaatagcttaatagtgcattttaattcaatacaacaatctactctacgggn |
194 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |
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|
| T |
52286977 |
agtttatattaaaagtcgtctaatatctagaatgagttatttaattagttaatagcttaatagtgcattttaattcaatacatcaatctattctatg--- |
52287073 |
T |
|
| Q |
195 |
nnnnnnnnnatgaacaatgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggc |
294 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
52287074 |
-atttttttatgaacaatgaaatgattggtttccataaatgagtcaagggtgtgacttgggtcagtttattcacactccattctgtagtatctatttggc |
52287172 |
T |
|
| Q |
295 |
aatagtttaagtagtttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaa |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52287173 |
aatagtttaagtagtttataagttaaactagtagctaatggactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaa |
52287272 |
T |
|
| Q |
395 |
aattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
442 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
52287273 |
aattagttagcaaactaactgatcaacataaaatgacataaaagatat |
52287320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 450 - 685
Target Start/End: Original strand, 52287391 - 52287628
Alignment:
| Q |
450 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatgttgatg |
549 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatgttgatg |
52287490 |
T |
|
| Q |
550 |
ctcctgtgctatgcaatcactgca-------tcaaaaggtatttggtttgttagaccttgagcctttcaattgttcctgtctatcatggataattttgaa |
642 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
52287491 |
ctcctgtgctaggcaatcactgcatcaaaattcaaaaggtatttggtttgttagaccttgggcctttcaattgttcctg----tcatggataattttgaa |
52287586 |
T |
|
| Q |
643 |
aagcaaatgatggaaaatcaaacaatgactgatataatgcacc |
685 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
52287587 |
aagcaaatgatgg-aaatcaaacaatgactgatataatacacc |
52287628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 501 - 658
Target Start/End: Original strand, 802575 - 802732
Alignment:
| Q |
501 |
taagtctatgtcaaacaaactcaagcttcacacctgacctatgttgatgctcctgtgctatgcaatcactgcatcaaaaggtatttggtttgttagacct |
600 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| |||| |||||| | || |||||||||||||||| || |
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|
| T |
802575 |
taagtctttgtcaaacaaactcaagctttgcacctcacatatattggtgctcctgtgttattcaattgctgcattgacagctatttggtttgttagaact |
802674 |
T |
|
| Q |
601 |
tgagcctttcaattgttcctgtctatcatggataattttgaaaagcaaatgatggaaa |
658 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
802675 |
tgaggctttcaattgctcctgtctatcatggataattttgaaaagcaaaagatggaaa |
802732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 285 - 442
Target Start/End: Original strand, 802311 - 802468
Alignment:
| Q |
285 |
tctatttggcaatagtttaagtagtttataagttaaactagtagcta--atagactacagttgaaagtttataaatgaaaagctagttgattgatattca |
382 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
802311 |
tctatttggcaatagtgtaagtagtttataagttaa-ctaatagcaactatagattatagttgaaagtttataaatgaaaagctagttgattgcaattca |
802409 |
T |
|
| Q |
383 |
agtggttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
442 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
802410 |
agtggttgttagaattaattggcgaactaactgataaacat-aaatgacatgaaagatat |
802468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 802053 - 802120
Alignment:
| Q |
30 |
taacccagttgcattcataggcacatgtaacaacttttagactcttgtcgggggcagcattaaataat |
97 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
802053 |
taacccagttgcattcatatgcacatgtaacaacttttagactcttgtcgggtgcagtattaaataat |
802120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 802251 - 802309
Alignment:
| Q |
211 |
atgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcaca |
269 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||||||| |
|
|
| T |
802251 |
atgaaatgattggtttccataattgagttaagggtatgacttgggtcaagttattcaca |
802309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
341 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
400 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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