View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17556_high_16 (Length: 331)

Name: NF17556_high_16
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17556_high_16
NF17556_high_16
[»] chr8 (4 HSPs)
chr8 (1-309)||(1424076-1424381)
chr8 (172-283)||(10711976-10712088)
chr8 (223-283)||(44420639-44420699)
chr8 (223-272)||(16985659-16985708)
[»] chr3 (5 HSPs)
chr3 (210-283)||(50056893-50056966)
chr3 (195-283)||(28095952-28096039)
chr3 (171-217)||(50057279-50057325)
chr3 (138-217)||(50057409-50057488)
chr3 (236-283)||(50061382-50061429)
[»] chr7 (2 HSPs)
chr7 (174-259)||(39364335-39364420)
chr7 (223-283)||(29443616-29443676)
[»] chr5 (1 HSPs)
chr5 (138-285)||(1678916-1679066)
[»] chr2 (3 HSPs)
chr2 (175-278)||(25476329-25476432)
chr2 (210-283)||(17508848-17508921)
chr2 (223-283)||(38500219-38500282)
[»] chr4 (2 HSPs)
chr4 (223-283)||(11393149-11393209)
chr4 (223-283)||(11402876-11402936)
[»] scaffold0245 (1 HSPs)
scaffold0245 (236-283)||(12452-12499)
[»] scaffold0118 (1 HSPs)
scaffold0118 (224-283)||(18936-18995)
[»] chr1 (1 HSPs)
chr1 (236-283)||(1286185-1286232)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 1424381 - 1424076
Alignment:
Q  1 tggcgtactacggaaagtgcactcggaatgaacagtacttgcgataaacagtttgcatggtgaatagtgttttctaatgaacagggcttttaggatctca 100  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1424381 tggcgcactatggaaagtgcactcgaaatgaacagtacttgcgataaacagtgtgcatggtgaatagtgttttctaatgaacagggcttttaggatctca 1424282  T
Q  101 aagagtccgcgatgaaggcaaaaactcacaataaagacgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagacccccca 200  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  | || ||||||||||||||||||||||||||||||||| ||||    
T  1424281 aagagtccgcgatgaacgcataaactcacaataaagacgaaaaaagcaaaagtaaccg-aaagactgcaactagggtttatgcggaaacaagacctccca 1424183  T
Q  201 agatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatatatatagggatccagctcc 300  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||     
T  1424182 agatcgggagctctgatgccacgtgaaaactaaacattatatttcagagacaaaaaatgtacaactactaatgtgtt--tatatatagggatccagctct 1424085  T
Q  301 ccaagaaat 309  Q
    |||||||||    
T  1424084 ccaagaaat 1424076  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 10712088 - 10711976
Alignment:
Q  172 tagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactacta 270  Q
    ||||||||||||||||||||||| |||||||||   ||| |||||||||| ||||||||| || ||||||| |||||||||||| |||| | | | ||||    
T  10712088 tagggtttatgcggaaacaagactccccaagattgagagttctgatgccatgtgaaaactgaatattatatgtcagagataaaataatgtatatccacta 10711989  T
Q  271 atgtgtttatata 283  Q
    |||| ||||||||    
T  10711988 atgtatttatata 10711976  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 44420699 - 44420639
Alignment:
Q  223 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||| || |||||||||||||||||||  ||  ||||| |||||||||||||||||    
T  44420699 gtgaaaactgaatattatatttcagagataaatgatatacaaccactaatgtgtttatata 44420639  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 16985659 - 16985708
Alignment:
Q  223 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaat 272  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||||||    
T  16985659 gtgaaaactgaatattatatttcagagataaataatgtacaaccactaat 16985708  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 50056966 - 50056893
Alignment:
Q  210 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  50056966 gctctgataccatgtgaaaactgaatattatatttcagagataaataatgtacaaccactaatgtgtttatata 50056893  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 28095952 - 28096039
Alignment:
Q  195 cccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactactaatgtgtttatata 283  Q
    ||||||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||| |||  ||||| |||||||||||||||||    
T  28095952 cccccaagatcgggagctc--atgccatgtgaaaacaaaatattatatttcagagataaaataatttacaaccactaatgtgtttatata 28096039  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 50057325 - 50057279
Alignment:
Q  171 ctagggtttatgcggaaacaagaccccccaagatcaggagctctgat 217  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  50057325 ctagggtttatgcggaagcaacaccccccaagatcgggagctctgat 50057279  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 50057488 - 50057409
Alignment:
Q  138 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgat 217  Q
    ||||||||| ||||||||  |||| ||| ||  |||||||||||| |||| |||  |||||||||||| |||||||||||    
T  50057488 cgaaaaaagaaaaagtaaccgcaaagacggcggctagggtttatgtggaagcaacgccccccaagatcgggagctctgat 50057409  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 50061429 - 50061382
Alignment:
Q  236 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  50061429 attatatttcagagataaataatgtagaacgactaatgtgtttatata 50061382  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 39364335 - 39364420
Alignment:
Q  174 gggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatg 259  Q
    |||||||||||||| |||| |||| |||||||||||||||||||  || ||||||||| ||  |||||||||| ||||||| ||||    
T  39364335 gggtttatgcggaagcaaggcccctcaagatcaggagctctgatatcatgtgaaaactgaatgttatatttcaaagataaataatg 39364420  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 29443616 - 29443676
Alignment:
Q  223 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||| || |||||||||||  |||||| |||  ||||| |||||||||||||||||    
T  29443616 gtgaaaactgaatattatatttcactgataaataatatacaaccactaatgtgtttatata 29443676  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 1678916 - 1679066
Alignment:
Q  138 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacat 237  Q
    ||||||||||||||||||  |||| | | ||  ||| |||||||| |||| |||| ||||| |||||||  ||||  ||||||| ||||||||  |  ||    
T  1678916 cgaaaaaagcaaaagtaaacgcaaaggcggcggctaaggtttatgtggaagcaaggccccctaagatcaaaagcttcgatgccatgtgaaaacatactat 1679015  T
Q  238 tatatttcagagat---aaaaaatgcacaactactaatgtgtttatatata 285  Q
    ||||||||||||||   |||||||| ||||| |||||| ||||||||||||    
T  1679016 tatatttcagagataaaaaaaaatgtacaaccactaatatgtttatatata 1679066  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 25476329 - 25476432
Alignment:
Q  175 ggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgt 274  Q
    ||||||||||||| |||| ||||    ||||  |||||||||||||| ||||||||| || ||||||||||| ||||||| |||  ||||| ||||||||    
T  25476329 ggtttatgcggaagcaaggcccctagtgatcgagagctctgatgccatgtgaaaactgaagattatatttcaaagataaataatttacaaccactaatgt 25476428  T
Q  275 gttt 278  Q
    ||||    
T  25476429 gttt 25476432  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 17508921 - 17508848
Alignment:
Q  210 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    |||||||| ||| ||||||| | || ||||||||||||| ||||| |||| ||||| |||||||||||||||||    
T  17508921 gctctgataccatgtgaaaattgaatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 38500282 - 38500219
Alignment:
Q  223 gtgaaaactaaacattatatttcaga---gataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||| || |||||||||||||   |||||| |||| ||||| |||||||||||||||||    
T  38500282 gtgaaaactgaatattatatttcagacgagataaataatgtacaaccactaatgtgtttatata 38500219  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 11393209 - 11393149
Alignment:
Q  223 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11393209 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11393149  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 11402936 - 11402876
Alignment:
Q  223 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11402936 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11402876  T

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Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 12452 - 12499
Alignment:
Q  236 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  12452 attatatttcagagataaataatgtacaaccactaatgtgtttatata 12499  T

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Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  224 tgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||| | |||||||||||||||    
T  18995 tgaaaactaaatattatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 1286185 - 1286232
Alignment:
Q  236 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 283  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1286185 attatatttcagagataaataatgtacaaccactaatgtgtttatata 1286232  T

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