View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_high_21 (Length: 298)
Name: NF17556_high_21
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 41686984 - 41686714
Alignment:
| Q |
10 |
aagaaaatgatcagcacctcctgttctgttccagaaaggatgtttcgcggcaatcgtgtcaacatagttattcaaatactgcattaggttgctataacta |
109 |
Q |
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| T |
41686984 |
aagaaaatgatcagcacctcctgttctgttccagaaaggatgtttcgcggcaatcgtgtcaacatagttattcaaatactgcattaggttgctataacta |
41686885 |
T |
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| Q |
110 |
ggcgaattttgaatgtacaatgtttcctctagcatttgagaactgaaaggcaggtaaaacaggtgagcattttttggatctttagtcacaaatactttat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41686884 |
ggcgaattttgaatgtacaatgtttcctctagcatttgagaactgaaaggcaggtaaaacaggtgagcattttttggatctttagtcacaaatactttat |
41686785 |
T |
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| Q |
210 |
ttgcttccatcagcttcatgaaccatccctcggaagcataaattcccaaaagatttggcgaatgcattatc |
280 |
Q |
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| T |
41686784 |
ttgcttccatcagcttcatgaaccatccctcggaagcataaattcccaaaagatttggcgaatgcattatc |
41686714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 51207190 - 51206921
Alignment:
| Q |
10 |
aagaaaatgatcagcacctcctgttctgttccagaaaggatgtttcgcggcaatcgtgtcaacatagttattcaaatactgcattaggttgctataacta |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| ||||||||||||| ||||||||||||||| |||| |||| |
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| T |
51207190 |
aagaaaatgatcagcacctcctgttctattccagaaagaatgtttcctggcaattgtgtctacatagttattcagatactgcattaggttcctatgacta |
51207091 |
T |
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| Q |
110 |
ggcgaattttgaatg-tacaatgtttcctctagcatttgagaactgaaaggcaggtaaaacaggtgagcattttttggatctttagtcacaaatacttta |
208 |
Q |
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| T |
51207090 |
tgtgaattt-gaatcatataatgcttcctcgagccttcgagaactaaaaggtaagtaaaacaggtgggccttctttgcatctttcgtgacaaatgcttta |
51206992 |
T |
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| Q |
209 |
tttgcttccatcagcttcatgaaccatccctcggaagcataaattcccaaaagatttggcgaatgcattat |
279 |
Q |
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| T |
51206991 |
ttagcttccatcaacctcatgaaccatccctcggaagcatatatgcccaaaagatatggtgaatgcattat |
51206921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 53733 - 53489
Alignment:
| Q |
11 |
agaaaatgatcagcacctcctgttctgttccagaaaggatgtttcgcggcaatcgtgtcaacatagttattcaaatactgcattaggttgctataactag |
110 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||| |||| |||||| |||| ||||| | || | ||| || || ||||| ||| ||| |
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| T |
53733 |
agaaaatgatcagcacctccagttctgttccagaaagaatgtctcgccgcaatcatgtctacataatcatgtagatattgaatcaggttcttatggctat |
53634 |
T |
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| Q |
111 |
gcgaattttgaatgtacaatgtttcctctagcatttgagaactgaaaggcaggtaaaacaggtgagcattttttggatctttagtcacaaatactttatt |
210 |
Q |
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| T |
53633 |
gtgaattcttcacatacaaggcttcctctagcatcctagaactgaatggcaagtaaaacagatgagccttctttggatttttggtaacaaatcgtttatt |
53534 |
T |
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| Q |
211 |
tgcttccatcagcttcatgaaccatccctcggaagcataaattcc |
255 |
Q |
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|||||||| |||||||| ||||| || || |||||||| ||||| |
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| T |
53533 |
agcttccattagcttcataaaccacccttcagaagcatagattcc |
53489 |
T |
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