View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_high_31 (Length: 239)
Name: NF17556_high_31
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 3305642 - 3305744
Alignment:
| Q |
118 |
aaacaagccaaaataacatt-atataccaccaaaagagatccacctagcaagaggagtgcaaaggaagaagaactcatagaacaacaacagttttacagt |
216 |
Q |
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| T |
3305642 |
aaacaagccaaaataacatttatataccaccaaaagagatccccctagcaagaggagtgcaaag---gaagaactcatagaacaacaacagttttacagt |
3305738 |
T |
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| Q |
217 |
aataat |
222 |
Q |
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|||||| |
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| T |
3305739 |
aataat |
3305744 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3305525 - 3305577
Alignment:
| Q |
1 |
ccctcatcagccttaggtgttacaattttcatcacacgaatattctagaatcc |
53 |
Q |
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| T |
3305525 |
ccctcgtcagccttatgtgttacaattttcatcacacgaatattctagaatcc |
3305577 |
T |
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