View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_high_4 (Length: 502)
Name: NF17556_high_4
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 33078022 - 33077634
Alignment:
| Q |
1 |
gattttataattgctacaagagaaattttgaatttggttttgcaatggatggaaaagaatgcgaagaggcaaatctagtttagttcagttaaccttgtat |
100 |
Q |
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| T |
33078022 |
gattttataattgctacaagagaaattttgaatttggttttgcaatggatggaaaagaatgcgaagaggcaaatctagtttagttcagttaaccttgtat |
33077923 |
T |
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| Q |
101 |
actatactgttaataatggatcaagaaatgtgatatttgaagagggatatcactttaactaatcatgtgcagttttactatgtcttaccaatggtaaggt |
200 |
Q |
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| T |
33077922 |
actatactgttaataatcgatcaagaaatgtgatatttgaagagggatatcactttaactaatcatgtgcagttttactatgtcttaccactggtaaggt |
33077823 |
T |
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| Q |
201 |
agttaaattaccacggtgtccgcggtttggtgtttcattgcatgttttgtaaattatgtcatgggttcaaacaactggaagggctaggaaacatggaaat |
300 |
Q |
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| T |
33077822 |
agttaaattaccacggtgtccgcggtttggtgtttcattgcatgttttgtaaattatgtcatgggttcaaacaactggaagggctaggaaacatggaaat |
33077723 |
T |
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| Q |
301 |
caaacagtcagatttgaaaccagaccaagattaccctccccctacaggtgcatgcttcttgcaccaaccatatctaacctaatctcgaa |
389 |
Q |
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| T |
33077722 |
caaacagtcagatttgaaaccagaccaagattaccctccccctacaggtgcatgcttcttgcaccaaccatatctaacctaatctcgaa |
33077634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 33077592 - 33077494
Alignment:
| Q |
387 |
gaatacataaaatacttgagagttgagacatgattgcatatccaaatctagttgttttatttccatttttgaacttatgggatctttgattagaaatatt |
486 |
Q |
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| T |
33077592 |
gaatacataaaatacttcagagttgagacatgattgcatatccaaatctag-tggtttatttccatttttgaacttatgggatctttgattagaaatatt |
33077494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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