View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17556_high_5 (Length: 495)
Name: NF17556_high_5
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 26155948 - 26156421
Alignment:
| Q |
1 |
actcttagtcgttgaaaatattttgaggtcaatgacttccaaattcgattacgtcctgtgttaaattaaagaatccaatg-cgtcacaaacttccattga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26155948 |
actcttagtcgttgaaaatattttgaggtcaatgacttccaaattcgattatgttgtgtgttaaattaaagaatccaatgtcgtcacaaacttccattga |
26156047 |
T |
|
| Q |
100 |
gtatttacaaagcaccttacttgtccatgagcaacatataagggatcaatatgaaaaaagtgaagaaaaggttctcaagatttcaaactctagaagggaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26156048 |
gtatttacaaagcaccttacttgtccatgagcaacatataagggatcaatatgacaaaagtgaagaaaaggttctcaagatttcaaactctagaagggaa |
26156147 |
T |
|
| Q |
200 |
tatggttattgtaggggttttatattggatcaaggtatcatggtagatatagataaaaaacaaggagtttatttaatgcttcaagtatcattagctatga |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
26156148 |
tatggttattgtaggggttttat--tggatcaaggtatcatggtagatgtagataaaa--caaggagtttatttaatgcttcaagtatcataagctagga |
26156243 |
T |
|
| Q |
300 |
ctctaccaaactgtgtatctaagttgggaggagaatgctaatttggctaaattagaagaagatggggaaaggcttctcattgctcaagagggattgagca |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26156244 |
ctctaccaaactgtgtatctaagttgggaggagaatgctaatttggctaaattagaagaagatggggaaaggcttctcattgctcaagaggaattgagca |
26156343 |
T |
|
| Q |
400 |
gtggtgctaggtaataggtgtggttcctagatttttgagtgtagccatcacatggtgggaacaaatgagtgactattt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26156344 |
gtggtgctaggtaataggtgtggttcctagatttttgagtgtagccatcacatggtgggaacaaatgagtgactattt |
26156421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 26178708 - 26179171
Alignment:
| Q |
9 |
tcgttgaaaatattttgaggtcaatgacttccaaattcgattacgtcctgtgttaaattaaagaatccaatg-cgtcacaaactt--ccattgagtattt |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| ||||||||| | | ||||||| ||||||| ||||| |
|
|
| T |
26178708 |
tcgttgaaaatattttgaggtaaatgact-ccaaatttgattacgttgtgtgttaaattaaataatccaatgacattgcaaacttttccattgactattt |
26178806 |
T |
|
| Q |
106 |
acaaagcaccttacttgtccatgagcaacatataagggatcaatatgaa---aaaagtgaagaaaaggttctcaagatttcaaactctagaagggaatat |
202 |
Q |
| |
|
| |||| || | ||||||||||||||||| |||||||| ||| || ||| |||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26178807 |
ataaagtacttcacttgtccatgagcaacgtataagggctcactaagaagaaaaaaatgaagaaaaggttctcaagatttcaaactctcaaagggaatat |
26178906 |
T |
|
| Q |
203 |
ggttattgtaggggttttatattggatcaaggtatcatggtagatatagataaaaaacaaggagtttatttaatgcttcaagtatcattagctatgactc |
302 |
Q |
| |
|
|||||||||| ||||| ||| ||||| || |||||||| ||| ||||||||| ||| |||||||||||||||||||||| |||| | ||| |||| |
|
|
| T |
26178907 |
ggttattgtaagggttgtat--tggataaatatatcatggaagaggtagataaaacaca--gagtttatttaatgcttcaagtttcataaactaggactt |
26179002 |
T |
|
| Q |
303 |
taccaaactgtgtatctaagttgggaggagaatgctaatttggctaaattagaagaagatggggaaaggcttctcattgctcaagagggattgagcagtg |
402 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26179003 |
taccaaagtgtgtgtccaagttgggaggaga-tgctaatttgactaaat---aagaagatgaggaaaggcttttcattgctcaagagggattgagtagtg |
26179098 |
T |
|
| Q |
403 |
gtgctaggtaataggtgtggttcctagatttttgagtgtagccatcacatggtgggaacaaatgagtgactattt |
477 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26179099 |
gtgctaggtaatatgtgtggttcctaga-ttttaagtgta-ccatcacatggtgggaacaaatgagtgactattt |
26179171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University