View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_high_6 (Length: 467)
Name: NF17556_high_6
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 445
Target Start/End: Complemental strand, 39581658 - 39581235
Alignment:
| Q |
21 |
aacggcccagaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaat |
120 |
Q |
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| T |
39581658 |
aacggcccagaagatttacaccagacacttttaccagagatgtttgagcagccagaaaccgagctgggaag-ataagtaaaggaatctatgaaataaaat |
39581560 |
T |
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| Q |
121 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
220 |
Q |
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| T |
39581559 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
39581460 |
T |
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| Q |
221 |
tagtacaatcattgtaactacaagggtcaaaggtttgctcattggttttcattcaatagaagttcaaaagaattatgaaatgactgaacttaatgctcaa |
320 |
Q |
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| T |
39581459 |
tagtacggtcattataactacaagggacaaaggtttgcttgtaggtactcattcttttgtagttcaaagtatttatgaaatgactgaacttagtgatcaa |
39581360 |
T |
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| Q |
321 |
cattctctcgagttgttttgtcggaatgcctttggaaagagccatcctgaaacaggctatgaagctgtctcttcccgtgcggttgaatatgccaagggtc |
420 |
Q |
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| T |
39581359 |
cattctcttgagttgttttgtcgaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccacgtcttctcgtgcggttggttatgcaaaaggtc |
39581260 |
T |
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| Q |
421 |
ttccattggcattaaaagttatagg |
445 |
Q |
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| T |
39581259 |
ttccattggctttaaaagtaatagg |
39581235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 43 - 446
Target Start/End: Original strand, 39620323 - 39620726
Alignment:
| Q |
43 |
agacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagcttggaaggaaaaaggt |
142 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| | |||||||| | ||||| || | |||||||| |
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| T |
39620323 |
agacacttttatcagagatgtttgagaagccagataccgatctgggaagtacaagtaaaggaatcaaagaaataaagcaaaagctgggcaataaaaaggt |
39620422 |
T |
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| Q |
143 |
tctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtacaatcattgtaactaca |
242 |
Q |
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||| |||||||||||||| |||||| | | |||||| || |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
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| T |
39620423 |
tcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttggcaggaggaagtgattggtttggcccaggtagtaggatcattataactaca |
39620522 |
T |
|
| Q |
243 |
agggtcaaaggtttgctcattggttttcattcaatagaagttcaaaagaattatgaaatgactgaacttaatgctcaacattctctcgagttgttttgtc |
342 |
Q |
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| T |
39620523 |
agggacaaaggtttgctcataggtactcattcttttgttgttcaaaagatttatgaaatgactgaacttaatgagaaagattctcttgagttgttttgtc |
39620622 |
T |
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| Q |
343 |
ggaatgcctttggaaagagccatcctgaaacaggctatgaagctgtctcttcccgtgcggttgaatatgccaagggtcttccattggcattaaaagttat |
442 |
Q |
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| T |
39620623 |
ggaatgcctttggaaagagccatcctgaaacaggctatgaagctgtgtcttctcgtgcggttggatatgccaagggtcttccattggctttaaaagtaat |
39620722 |
T |
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| Q |
443 |
aggt |
446 |
Q |
| |
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|||| |
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| T |
39620723 |
aggt |
39620726 |
T |
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