View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_14 (Length: 387)
Name: NF17556_low_14
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 33347022 - 33347396
Alignment:
| Q |
1 |
actgactccttgccattcaatggtccagccaccgcactgatatcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33347022 |
actgactccttgccattcaatggtccagccaccgcactgatgtcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaaga |
33347121 |
T |
|
| Q |
101 |
gaagaggtaacaaaggcttctcaggagatttaccannnnnnnagaaggaccatggatttcctcacagcatccctagccagttctctatgcacctgttcag |
200 |
Q |
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| T |
33347122 |
g-----gtaacaaaggcttctcaggagatttaccatttttt-agaaggaccatggatttcctcacagcatccctagccagttctctatgcacctgttcag |
33347215 |
T |
|
| Q |
201 |
aattcaaataagcatagatgagacatttatagggtgatccttataagatatctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatccc |
300 |
Q |
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| T |
33347216 |
aattcaaataagcatagatgagacatttatagggtgatccttataagatatctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatccc |
33347315 |
T |
|
| Q |
301 |
aagatacttgaccaaactgtaatcagcaaaagggttctcaaaaatacccatcatgaatttaacccgcaaaattcttctcac |
381 |
Q |
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| T |
33347316 |
aagatacttgaccaaactgtaatcagcaaaagggttctcaaaaatacccatcatgaatttaacccgcaaaattcttctcac |
33347396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 33354064 - 33354437
Alignment:
| Q |
3 |
tgactccttgccattcaatggtccagccaccgcactgatatcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaagaga |
102 |
Q |
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| T |
33354064 |
tgactccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagag- |
33354162 |
T |
|
| Q |
103 |
agaggtaacaaaggcttctcaggagatttaccannnnnnnagaaggaccatggatttcctcacagcatccctagccagttctctatgcacctgttcagaa |
202 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||| | ||| |||||||| || |
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| T |
33354163 |
----gtaacaaaggcttctcagcagatttaccatttttt-agaaggaccatggatttccttacagcttccctagccagttctttgtgctcctgttcaaaa |
33354257 |
T |
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| Q |
203 |
ttcaaataagcatagatgagacatttatagggtgatccttataag--atatctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatccc |
300 |
Q |
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| T |
33354258 |
tttaaacaagcatagaagagatatttatagggtggtccagataagttatatctaattcgaa-cttagggatgtaaaaggaaaatagctaaccttaatccc |
33354356 |
T |
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| Q |
301 |
aagatacttgaccaaactgtaatcagcaaaagggttctcaaaaatacccatcatgaatttaacccgcaaaattcttctcac |
381 |
Q |
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| T |
33354357 |
aagatatttgaccaaactgtaatcggcaaatgggttctcaaaaatacccatcatgaatttaacccgcaaaattcttctcac |
33354437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 9999141 - 9999047
Alignment:
| Q |
7 |
tccttgccattcaatggtccagccaccgcactgatatcctagattatttgcatggcttccggccacaagtatctttggaa-cctttttaggaagag |
101 |
Q |
| |
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||||||||||| ||||||||| ||||| || |||||||||||||||| ||||| ||||| || |||||||| ||||||| ||||||||||||||| |
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| T |
9999141 |
tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtat-tttggaagcctttttaggaagag |
9999047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 9992006 - 9991912
Alignment:
| Q |
7 |
tccttgccattcaatggtccagccaccgcactgatatcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaagag |
101 |
Q |
| |
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||||||||| | ||||||||| ||||| || |||||||||||||||| ||||| ||||| || || ||||| |||||| ||||||||||||||| |
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| T |
9992006 |
tccttgccactgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacgagtatttttggagcctttttaggaagag |
9991912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 10004857 - 10004763
Alignment:
| Q |
7 |
tccttgccattcaatggtccagccaccgcactgatatcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaagag |
101 |
Q |
| |
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||||||||||| ||||||||| ||||| || |||||||||||||||| ||||| ||||| || |||||||| |||| | |||||||||||||| |
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| T |
10004857 |
tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagactttttaggaagag |
10004763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 10013395 - 10013301
Alignment:
| Q |
7 |
tccttgccattcaatggtccagccaccgcactgatatcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaagag |
101 |
Q |
| |
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|||||||||| ||||||||| ||||| || |||| ||||| ||||| ||||||||||| || |||||||| |||||| ||||||||||||||| |
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| T |
10013395 |
tccttgccatgtaatggtccatccaccacattgatttcctatattatcagcatggcttccagcaacaagtatttttggagcctttttaggaagag |
10013301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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