View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17556_low_18 (Length: 325)

Name: NF17556_low_18
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17556_low_18
NF17556_low_18
[»] chr1 (3 HSPs)
chr1 (14-96)||(7220802-7220884)
chr1 (14-66)||(33713311-33713364)
chr1 (14-54)||(13211787-13211827)
[»] chr7 (7 HSPs)
chr7 (14-89)||(5102022-5102097)
chr7 (9-76)||(8038174-8038242)
chr7 (14-84)||(20175173-20175244)
chr7 (14-66)||(2504812-2504865)
chr7 (14-54)||(2564472-2564512)
chr7 (14-54)||(3327047-3327087)
chr7 (14-54)||(26134230-26134270)
[»] chr6 (1 HSPs)
chr6 (14-98)||(10504213-10504298)
[»] chr8 (3 HSPs)
chr8 (14-96)||(24119143-24119226)
chr8 (14-66)||(17972805-17972858)
chr8 (14-66)||(45265009-45265062)
[»] chr4 (1 HSPs)
chr4 (14-73)||(12590308-12590366)
[»] chr2 (2 HSPs)
chr2 (38-97)||(25939751-25939810)
chr2 (14-54)||(12950511-12950551)
[»] chr5 (3 HSPs)
chr5 (14-66)||(20533496-20533549)
chr5 (14-54)||(17337279-17337319)
chr5 (18-69)||(17830733-17830785)
[»] chr3 (1 HSPs)
chr3 (14-54)||(21302520-21302560)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 7220802 - 7220884
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaaggtgaaagaagaatgaaattaccagactaatttaaatcatgaag 96  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||   ||||||||||| ||||||||    
T  7220802 ttctacaaacgggcaagcttatctcgtctaccttaccaaggtgaaagaagaatgaaattaatggactaatttaagtcatgaag 7220884  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 33713311 - 33713364
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaat 66  Q
    ||||||||| |||||||||||||| |||||  ||||||||| ||||||||||||    
T  33713311 ttctacaaatgggcaaccttatcttgtctatcttaccaaggatgaaagaagaat 33713364  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 13211827 - 13211787
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    |||||||||||||||||||| |||| ||||| |||||||||    
T  13211827 ttctacaaacgggcaaccttgtctcatctaccttaccaagg 13211787  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 5102097 - 5102022
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaaggtgaaagaagaatgaaattaccagactaatttaaat 89  Q
    ||||||||||| |||||| |||||| ||||| ||||| |||||||||||||||||| |||| |  |||||||||||    
T  5102097 ttctacaaacgagcaaccctatctcatctaccttaccgaggtgaaagaagaatgaagttactaagctaatttaaat 5102022  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 8038174 - 8038242
Alignment:
Q  9 gataattctacaaacgggcaaccttatctcgtctacattacc-aaggtgaaagaagaatgaaattacca 76  Q
    |||| |||||||||||||||||| | |||||||||||||||| ||| |||||||||||| || ||||||    
T  8038174 gatagttctacaaacgggcaaccctgtctcgtctacattaccaaagatgaaagaagaataaagttacca 8038242  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 20175173 - 20175244
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaatgaaattaccagactaatt 84  Q
    |||||||||||| |||||  ||||||||||| ||||||||| ||||||||||||||| |||| || ||||||    
T  20175173 ttctacaaacggacaaccccatctcgtctaccttaccaaggatgaaagaagaatgaagttactaggctaatt 20175244  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 2504812 - 2504865
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaat 66  Q
    ||||||||| ||| |||| |||||||||||| ||||||||| ||||||||||||    
T  2504812 ttctacaaatgggaaaccatatctcgtctaccttaccaaggatgaaagaagaat 2504865  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 2564472 - 2564512
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    |||||||||| ||||||| |||||||||||| |||||||||    
T  2564472 ttctacaaacaggcaaccctatctcgtctaccttaccaagg 2564512  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 3327087 - 3327047
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    |||||||||| ||||||| |||||||||||| |||||||||    
T  3327087 ttctacaaacaggcaaccatatctcgtctaccttaccaagg 3327047  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 26134270 - 26134230
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    |||||||||||| ||||| |||||||||||| |||||||||    
T  26134270 ttctacaaacggacaaccatatctcgtctaccttaccaagg 26134230  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 10504213 - 10504298
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaa-ggtgaaagaagaatgaaattaccagactaatttaaatcatgaagta 98  Q
    ||||||||| |||||||| |||||||||||| ||||||| | ||||||||||| ||| ||||  |||| |||||| ||||||||||    
T  10504213 ttctacaaaggggcaaccctatctcgtctaccttaccaatgatgaaagaagaacgaagttactcgactgatttaagtcatgaagta 10504298  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 24119226 - 24119143
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaatgaaattaccagactaatttaaatcatgaag 96  Q
    |||||||||||||||||| |||||||||||| |||||| || |||||||| |  ||| |||| || || |||||||||||||||    
T  24119226 ttctacaaacgggcaaccctatctcgtctaccttaccagggatgaaagaaaatcgaagttactaggctgatttaaatcatgaag 24119143  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 17972805 - 17972858
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaat 66  Q
    ||||| ||||||||||||||||||||||||| | ||||||| || |||||||||    
T  17972805 ttctaaaaacgggcaaccttatctcgtctacctcaccaaggatgtaagaagaat 17972858  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45265062 - 45265009
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaat 66  Q
    |||||||||||| ||| | |||||||||||| ||||||||| ||||||||||||    
T  45265062 ttctacaaacggccaatcatatctcgtctactttaccaaggatgaaagaagaat 45265009  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 12590366 - 12590308
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaaggtgaaagaagaatgaaatta 73  Q
    ||||||||||||||||||||||||||||||| |||  |||| |||| |||||| ||||||    
T  12590366 ttctacaaacgggcaaccttatctcgtctaccttataaaggggaaa-aagaataaaatta 12590308  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 25939751 - 25939810
Alignment:
Q  38 cgtctacattaccaaggtgaaagaagaatgaaattaccagactaatttaaatcatgaagt 97  Q
    ||||||| ||||||||||||||| |||||| ||||||  |||| |||||| |||||||||    
T  25939751 cgtctaccttaccaaggtgaaaggagaatggaattactggacttatttaagtcatgaagt 25939810  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 12950551 - 12950511
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  12950551 ttctacaaacgggcagccctatctcgtctaccttaccaagg 12950511  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 20533549 - 20533496
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaat 66  Q
    ||||||||| |||||||| |||||| ||||||||||||||| || |||||||||    
T  20533549 ttctacaaatgggcaaccatatctcatctacattaccaaggatgtaagaagaat 20533496  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 17337319 - 17337279
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    |||||||||||| |||||||||||||||||| |||| ||||    
T  17337319 ttctacaaacggacaaccttatctcgtctaccttacgaagg 17337279  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 17830733 - 17830785
Alignment:
Q  18 acaaacgggcaaccttatctcgtctacattaccaagg-tgaaagaagaatgaa 69  Q
    |||||||||||||| |||||||||||| | |||| || |||||||||||||||    
T  17830733 acaaacgggcaaccatatctcgtctacctcaccacggatgaaagaagaatgaa 17830785  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 21302520 - 21302560
Alignment:
Q  14 ttctacaaacgggcaaccttatctcgtctacattaccaagg 54  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  21302520 ttctacaaacgagcaaccctatctcgtctaccttaccaagg 21302560  T

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