View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17556_low_19 (Length: 324)

Name: NF17556_low_19
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17556_low_19
NF17556_low_19
[»] chr4 (1 HSPs)
chr4 (21-313)||(38887201-38887494)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 38887494 - 38887201
Alignment:
Q  21 gtccccacccaattcattgccactttctaactcacgtcctttgttccatttatggttatgctgcattcacacctaaaatcttcttgaaaatcttcctata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38887494 gtccccacccaattcattgccactttctaactcacgtcctttgttccatttatggttatgctgcattcacacctaaaatcttcttcaaaatcttcctata 38887395  T
Q  121 tctannnnnnn-ttttctacaatatctcctccaaatcccactgaaaatgaggaacagaatcaaccatctcctcccaggtgatttttagcaatcaccacca 219  Q
    ||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38887394 tctaccccccccttttctccaatatctcctccaaatcccactgaaaatgaggaacagaatcaaccatctcctcccaggtgatttttagcaatcaccacca 38887295  T
Q  220 actatccttccaaaacctagctacctttttcaccctttcccctcttaggtgcttccctaaaagcgttcttttccacaaacatttcacttccttt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38887294 actatccttccaaaacctagctacctttttcaccctttcccctcttaggtgcttccctaaaagcgttcttttccacaaacatttcacttccttt 38887201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University