View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_20 (Length: 322)
Name: NF17556_low_20
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_20 |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 13599744 - 13599597
Alignment:
| Q |
163 |
agtattcttgtgcaaccctaatccataaagcaagcttgaaatctgacttttctcccttttactctctcagccgagtcctccctctccatagataataact |
262 |
Q |
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| T |
13599744 |
agtattcttgtgcaaccctaatccataaagcaagcttgaaatctgacttttctcccttttactctctcagccgagtcctccctctccatagataataact |
13599645 |
T |
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| Q |
263 |
tgggaaaaaattcaattaaagctcatcaaatggccaggcatgtttgat |
310 |
Q |
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| T |
13599644 |
tgggaaaaaattcaattaaagctcatcaaatggccaggcatgtttgat |
13599597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 13600102 - 13599988
Alignment:
| Q |
20 |
atatgggatcaagaaacaaagatgtcaagccttaaccgcaatggtttttaagaaaattctaaatttcgaggacgaaatttctttaaggatggtagagtgt |
119 |
Q |
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| T |
13600102 |
atatgggatcaagaaacaaagatgtcaagcgttaaccgcaatggtttttacggaaattctaaattttgaggacgaaatttctataaggagggtagactgt |
13600003 |
T |
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| Q |
120 |
aacatcccgcttaaa |
134 |
Q |
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| T |
13600002 |
aacatcccgcttaaa |
13599988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 2392 - 2442
Alignment:
| Q |
77 |
tctaaatttcgaggacgaaatttctttaaggatggtagagtgtaacatccc |
127 |
Q |
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| T |
2392 |
tctaaatttcgaggacgaaatttctttaaggggggtagagtgtaatatccc |
2442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 21314490 - 21314540
Alignment:
| Q |
77 |
tctaaatttcgaggacgaaatttctttaaggatggtagagtgtaacatccc |
127 |
Q |
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| T |
21314490 |
tctaaatttcgaggacgaaatttctttaatgggggtagagtgtaatatccc |
21314540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 21334277 - 21334327
Alignment:
| Q |
77 |
tctaaatttcgaggacgaaatttctttaaggatggtagagtgtaacatccc |
127 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
21334277 |
tctaaatttcgaggacgaaatttctttaatgggggtagagtgtaatatccc |
21334327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 15560055 - 15560110
Alignment:
| Q |
74 |
aattctaaatttcgaggacgaaatttctttaaggatggtagagtgtaacatcccgct |
130 |
Q |
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| T |
15560055 |
aattctaaatttcgaggacaaaattt-tttaagggcggtagagtgtaacatcccgct |
15560110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 4066 - 4137
Alignment:
| Q |
56 |
cgcaatggtttttaagaaaattctaaatttcgaggacgaaatttctttaaggatggtagagtgtaacatccc |
127 |
Q |
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| T |
4066 |
cgcagtggttgttaagtaatctctaaattttgaggacgaaatttctttaaggggggtagagtgtaatatccc |
4137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 8353 - 8412
Alignment:
| Q |
76 |
ttctaaatttcgaggacgaaatttc-tttaaggatggtagagtgtaacatcccgcttaaa |
134 |
Q |
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|||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||| |
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| T |
8353 |
ttctaactttcgaggacgaaatttcttttaagggaggtagagtgtaatatcccgcttaaa |
8412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 15766 - 15825
Alignment:
| Q |
76 |
ttctaaatttcgaggacgaaatttcttt-aaggatggtagagtgtaacatcccgcttaaa |
134 |
Q |
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|||||| |||||||| |||||||||||| |||| |||||||||||| |||||||||||| |
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| T |
15766 |
ttctaactttcgagggcgaaatttcttttaagggaggtagagtgtaatatcccgcttaaa |
15825 |
T |
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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 16142 - 16094
Alignment:
| Q |
79 |
taaatttcgaggacgaaatttctttaaggatggtagagtgtaacatccc |
127 |
Q |
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||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
16142 |
taaatttcgaggatgaaatttctttgaggggggtagagtgtaacatccc |
16094 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 14823567 - 14823615
Alignment:
| Q |
79 |
taaatttcgaggacgaaatttctttaaggatggtagagtgtaacatccc |
127 |
Q |
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||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
14823567 |
taaatttcgaggatgaaatttctttgaggggggtagagtgtaacatccc |
14823615 |
T |
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