View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_21 (Length: 308)
Name: NF17556_low_21
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 47712373 - 47712652
Alignment:
| Q |
11 |
cacagacagcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712373 |
cacacacagcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccc |
47712472 |
T |
|
| Q |
111 |
caacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatca |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712473 |
caacgaccgaataatatcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatca |
47712572 |
T |
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| Q |
211 |
tgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712573 |
tgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagc |
47712652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 19795474 - 19795738
Alignment:
| Q |
11 |
cacagacagcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccc |
110 |
Q |
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|||| |||||||||||||||||||| || || ||||||||||||||||| || |||||| ||||||| ||||| ||||| |||||||||||| |||| | |
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| T |
19795474 |
cacacacagcaagacaattcctcatttttcccttcttgagcaaatcatcaacaattctcttccactgcaactcagccacttctccaccatcttcatcatc |
19795573 |
T |
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| Q |
111 |
caacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatca |
210 |
Q |
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||| ||| ||||| || ||||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||||||||||||| |||||| |
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| T |
19795574 |
caaagactctataatctcgtgaggaagcaaagcaccagcagcaatagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatca |
19795673 |
T |
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| Q |
211 |
tgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaa |
275 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| |||||||| |
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| T |
19795674 |
tgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtatggaatcaa |
19795738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 19786105 - 19785849
Alignment:
| Q |
19 |
gcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccccaacgacc |
118 |
Q |
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||||||||||| ||||||| |||||||||||||||||||| || |||||| ||||||| ||||| || || ||||||||||||||||||||||| ||| |
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| T |
19786105 |
gcaagacaatttttcatctttcctttcttgagcaaatcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagact |
19786006 |
T |
|
| Q |
119 |
gaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaa |
218 |
Q |
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||||| | ||||||||||||||||||||||| || |||||||| || | |||||||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
19786005 |
ctataatctggtgaggaagcaaagcaccagcagcaatagtagtctttcctgccttcacatccttcaagtacttctcaaacctctccttatcatgcttcaa |
19785906 |
T |
|
| Q |
219 |
aaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaa |
275 |
Q |
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|||||| || |||||||||| |||||||||||| ||||| || |||||||||||||| |
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| T |
19785905 |
aaacttttccttataaaacttcatcgccacagaagcaactctattgtaaggaatcaa |
19785849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 15834789 - 15835045
Alignment:
| Q |
19 |
gcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccccaacgacc |
118 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||| || |||||| ||||||| ||||| |||| |||||||||| ||||| | || ||| |
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| T |
15834789 |
gcaagacaatttttcatctttcctttcttgagcaaatcatcaacaattctcttccactgcaactcatccacttctccaccatatccattcaaaaaagact |
15834888 |
T |
|
| Q |
119 |
gaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaa |
218 |
Q |
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||||| | |||||||||||||||||||||||| || ||||||||||| | |||||||||| ||| |||||||||||||||| | |||||||||||| |
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| T |
15834889 |
ttataatcttatgaggaagcaaagcaccagcagccatagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaa |
15834988 |
T |
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| Q |
219 |
aaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaa |
275 |
Q |
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||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |
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| T |
15834989 |
aaacttctccttataaaactccatggccacagaagcaaccctattataaggaatcaa |
15835045 |
T |
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