View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17556_low_23 (Length: 292)

Name: NF17556_low_23
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17556_low_23
NF17556_low_23
[»] chr6 (5 HSPs)
chr6 (18-171)||(33630940-33631094)
chr6 (198-278)||(4792842-4792922)
chr6 (198-278)||(29873623-29873703)
chr6 (198-278)||(2017928-2018008)
chr6 (213-278)||(22516900-22516965)
[»] chr7 (3 HSPs)
chr7 (198-278)||(30504214-30504294)
chr7 (198-278)||(24279023-24279103)
chr7 (198-278)||(42437427-42437507)
[»] chr3 (9 HSPs)
chr3 (198-278)||(55094045-55094125)
chr3 (197-278)||(5635908-5635989)
chr3 (198-278)||(2182199-2182279)
chr3 (198-278)||(51225501-51225581)
chr3 (201-278)||(32771509-32771586)
chr3 (198-278)||(17257143-17257223)
chr3 (198-278)||(35494598-35494678)
chr3 (198-262)||(50380643-50380707)
chr3 (198-260)||(36316755-36316817)
[»] chr2 (7 HSPs)
chr2 (198-278)||(11364404-11364484)
chr2 (198-274)||(23048845-23048921)
chr2 (198-278)||(8667032-8667112)
chr2 (203-278)||(43890687-43890762)
chr2 (198-278)||(44077950-44078030)
chr2 (216-278)||(21632369-21632431)
chr2 (238-278)||(28720269-28720309)
[»] scaffold0854 (1 HSPs)
scaffold0854 (198-278)||(2795-2875)
[»] chr1 (7 HSPs)
chr1 (198-278)||(50503984-50504064)
chr1 (198-275)||(4475663-4475740)
chr1 (201-278)||(21259459-21259536)
chr1 (201-278)||(50877291-50877368)
chr1 (198-278)||(49695938-49696018)
chr1 (198-278)||(51548931-51549011)
chr1 (198-231)||(39277540-39277573)
[»] chr4 (8 HSPs)
chr4 (203-278)||(53060935-53061010)
chr4 (198-272)||(51543489-51543563)
chr4 (198-278)||(6033335-6033415)
chr4 (198-278)||(8143836-8143916)
chr4 (198-278)||(33167524-33167604)
chr4 (201-278)||(29775872-29775949)
chr4 (198-278)||(38829068-38829150)
chr4 (213-278)||(1139660-1139725)
[»] chr8 (5 HSPs)
chr8 (198-278)||(8348509-8348589)
chr8 (198-278)||(45309076-45309156)
chr8 (198-278)||(12279747-12279827)
chr8 (203-278)||(42074713-42074788)
chr8 (198-278)||(8951897-8951980)
[»] chr5 (4 HSPs)
chr5 (202-278)||(4887968-4888044)
chr5 (198-278)||(38163132-38163212)
chr5 (198-278)||(38973971-38974051)
chr5 (203-278)||(26365489-26365564)
[»] scaffold0016 (1 HSPs)
scaffold0016 (214-275)||(200906-200967)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 33631094 - 33630940
Alignment:
Q  18 tattttgggaaactttagagcgatctataggttatgcctgagttatacttatggttgacagtataatatagtgtatattttaaaattgtgtacttattat 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33631094 tattttgggaaactttagagtgatctataggttatgcctgagttatacttatggttgacagtatattatagtgtatattttaaaattgtgtacttattat 33630995  T
Q  118 ttgggtgtaaaacaagtggtctctatgttcatttgtag-agactaatctctttga 171  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33630994 ttgggagtaaaacaagtggtctctatgttcatttgtagcagactaatctctttga 33630940  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 4792842 - 4792922
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||    
T  4792842 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatttt 4792922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 29873623 - 29873703
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  29873623 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 29873703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 2018008 - 2017928
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||    
T  2018008 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtagacagtatgtgattgttctgatttt 2017928  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 22516965 - 22516900
Alignment:
Q  213 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||||| ||  ||||||||||||| |||||||||| ||||||||||||||||||||    
T  22516965 gaaatataaatagaaaatatcattatacttttaataatgtaaacaatatgtgattgttctgatttt 22516900  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 30504214 - 30504294
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  30504214 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 30504294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 24279103 - 24279023
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  24279103 aacagagttgatgaggaaatataaatataaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 24279023  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 42437507 - 42437427
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||| ||||||||||||||    
T  42437507 aacatagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtcattgttctgatttt 42437427  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 55094125 - 55094045
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  55094125 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 55094045  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 5635908 - 5635989
Alignment:
Q  197 aaacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  5635908 aaacagagttgatgatggaatataaatagaaactaccattatacttttaataatgtaaacaatatgtgattgttctgatttt 5635989  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 2182279 - 2182199
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  2182279 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 2182199  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 51225501 - 51225581
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  51225501 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgatttt 51225581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 32771586 - 32771509
Alignment:
Q  201 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||    
T  32771586 agagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatttt 32771509  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 17257143 - 17257223
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||| ||||||||||||||||    
T  17257143 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacattatttgattgttctgatttt 17257223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 35494678 - 35494598
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||| |||||| ||||||||||| |||||||  ||||||||||||| |||||||| |||||||||||||||| |||||    
T  35494678 aacagagatgatgaggaaatataaattgaaactatcattatacttttaataatgtaaatagtatgtgattgttcttatttt 35494598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 50380643 - 50380707
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatg 262  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  50380643 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatg 50380707  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 36316817 - 36316755
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagta 260  Q
    |||||||||||||| |||||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  36316817 aacagagttgatgaggaaatataaatataaagtatcattatacttttaataatgtaaacagta 36316755  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 11364404 - 11364484
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  11364404 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 11364484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 23048845 - 23048921
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctga 274  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  23048845 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctga 23048921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 8667112 - 8667032
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||| |||||||    
T  8667112 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttatgatttt 8667032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 43890687 - 43890762
Alignment:
Q  203 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  43890687 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgatttt 43890762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 44078030 - 44077950
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| |||||||||  ||||||||||||||||||  ||||||||||| | |||||||||| ||||||||||||||||||||    
T  44078030 aacatagttgatgagaaaatataaatagaaactatcattatacttttgataatgtaaacaatatgtgattgttctgatttt 44077950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 21632369 - 21632431
Alignment:
Q  216 atataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| |||||||    
T  21632369 atataaatagaaaatatcattatacttttaataatgtaaacagtatgtgattgttttgatttt 21632431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 28720309 - 28720269
Alignment:
Q  238 tacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  28720309 tacttttaataatgtaaaaagtatgtgattgttctgatttt 28720269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 2875 - 2795
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||    
T  2875 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatttt 2795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 50503984 - 50504064
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  50503984 aacagagttgatgagaaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 50504064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 4475740 - 4475663
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 275  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  4475740 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 4475663  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 21259536 - 21259459
Alignment:
Q  201 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  21259536 agagttgatgaggaaatataaaaagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 21259459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 50877368 - 50877291
Alignment:
Q  201 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||    
T  50877368 agagttgatgaggaaatataaatagaaactatcattatacttttaatgatgtaaacagtatgtgattgttctgatttt 50877291  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 49695938 - 49696018
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||||||  |||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||    
T  49695938 aacagagttgatgagaaaatataaatagaaactgtcattatacttttaataatgtaaacagtatgtgattgttctgatttt 49696018  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 51548931 - 51549011
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||| |||||||||||||||    
T  51548931 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgcgattgttctgatttt 51549011  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 39277540 - 39277573
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaacta 231  Q
    |||||||||||||| |||||||||||||||||||    
T  39277540 aacagagttgatgaggaaatataaatagaaacta 39277573  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 53060935 - 53061010
Alignment:
Q  203 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  53060935 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 53061010  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 51543489 - 51543563
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttct 272  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  51543489 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttct 51543563  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 6033415 - 6033335
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  6033415 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgatttt 6033335  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 8143916 - 8143836
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||| | |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||    
T  8143916 aacagagttgatcaggaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattgttctgatttt 8143836  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 33167604 - 33167524
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  33167604 aacacagttgatgaggaaatataaatagaaactattattatacttttaataatgtaaatagtatgtgattgttctgatttt 33167524  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 29775872 - 29775949
Alignment:
Q  201 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||| |||| ||||||||||||||||||||||||||    
T  29775872 agagttgatgaggaaatataaatataaactatcattatacttttaataatgcaaacagtatgtgattgttctgatttt 29775949  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 38829068 - 38829150
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaaca--gtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||   ||||||||||||||||||||    
T  38829068 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatatgtgattgttctgatttt 38829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 1139660 - 1139725
Alignment:
Q  213 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||| |||||||||    
T  1139660 gaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattggtctgatttt 1139725  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 8348589 - 8348509
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||| ||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||    
T  8348589 aacagaattgatgaggaaatataaatagaaactatcattatacttttaattatgtaaacagtatgtgattgttctgatttt 8348509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 45309156 - 45309076
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||    
T  45309156 aacatagttgatgaggaaatataaatagaaactatcattatgcttttaataatgtaaacagtatgtgattgttctgatttt 45309076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 12279827 - 12279747
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| ||||| |||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  12279827 aacaaagttgatgaggaaatgtaaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgatttt 12279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 42074788 - 42074713
Alignment:
Q  203 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||  |||||||||||||||    
T  42074788 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatacgattgttctgatttt 42074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 8951897 - 8951980
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaact---acgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| ||||||||||||||||||   |  ||||||||||||| |||||||||||||||||||||||||||||||    
T  8951897 aacatagttgatgaggaaatataaatagaaactatcataattatacttttaataatgtaaacagtatgtgattgttctgatttt 8951980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 4887968 - 4888044
Alignment:
Q  202 gagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||| || |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  4887968 gagttgacgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttt 4888044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 38163212 - 38163132
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||||||||||||| ||||||||||||||||||   ||||||||||||| |||||||||| ||||||||||||||||||||    
T  38163212 aacagagttgatgaggaaatataaatagaaactgtcattatacttttaataatgtaaacaatatgtgattgttctgatttt 38163132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 38973971 - 38974051
Alignment:
Q  198 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    |||| ||||||||| |||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||    
T  38973971 aacaaagttgatgaggaaatataaatagaaactatccttatacttttaataatgtaaacagtatgtgattgttctgatttt 38974051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 26365564 - 26365489
Alignment:
Q  203 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatttt 278  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||    
T  26365564 agttgatgaggaaatataaatagaaactatcattatacttttaataatgaaaacagtatgtgattgttctgatttt 26365489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 200967 - 200906
Alignment:
Q  214 aaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 275  Q
    ||||| ||||||||||||  | ||||||||||| |||||||| |||||||||||||||||||    
T  200967 aaatagaaatagaaactatcactatacttttaataatgtaaatagtatgtgattgttctgat 200906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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