View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_27 (Length: 273)
Name: NF17556_low_27
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 2013429 - 2013677
Alignment:
| Q |
9 |
gaaaataattacaccatcaaattattatttcacgatgttcaaattaaatcagaggaattaacgagtttcagaaaaattatggttcctttctgnnnnnnnt |
108 |
Q |
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| T |
2013429 |
gaaaataattacaccatcaaatcattatttcacgatgttcaaattaaatcagaggaattaacgagtttcacaaaaattatggttcctttctgaaaaaaat |
2013528 |
T |
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| Q |
109 |
aatacgaatatttaaaacaaagatacaacttttgtttcatctaaaatcagaaccggtagataaatccaacggctgagattcgaggagtaggaatggggta |
208 |
Q |
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| T |
2013529 |
aatacgaatatttaaaacaaagatacaacttttgtttcatctaaaatcagaaccggtagataaatccaacggctgagattcgaggagtgggaatggggta |
2013628 |
T |
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| Q |
209 |
aagacgttttggctgtgagatgaaatccagagttgtttgcatctcgttt |
257 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2013629 |
aagacgttttagctgtgagatgaaatccagagttgtttgcatctcgttt |
2013677 |
T |
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