View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_29 (Length: 254)
Name: NF17556_low_29
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 3590171 - 3589918
Alignment:
| Q |
1 |
aacaggagaattctttaataaataacacaagggaattcttgcgaaaatcgtttcatgttgataagttgttttaaattgacatgtttttatcgaaattaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3590171 |
aacaggagaattctttaataaataacacaagggaattcttgcgaaaatcgtttcatgttgataagttgttttaaattgacatgtttttatcgaaattaaa |
3590072 |
T |
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| Q |
101 |
actagtaattcttatcaacccttattcacctcaaataaagaaattaataataaagtaatatcttataataagattgtttgaatcttgatcttgacacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3590071 |
actagtaattcttatcaacccttattcacctcaaataaagaaattaataataaagtaatatcttataataagattgtttgaatcttgatcttgacacaca |
3589972 |
T |
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| Q |
201 |
tcaataatatatcgaattttatatttatgaaaaaactagtagaaaagtatacac |
254 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3589971 |
tcaataatatatcgaattttatatttatgtaaaaactagtagaaaagtatacac |
3589918 |
T |
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