View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_3 (Length: 518)
Name: NF17556_low_3
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 35206528 - 35206037
Alignment:
| Q |
9 |
agcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatac |
108 |
Q |
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| T |
35206528 |
agcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatac |
35206429 |
T |
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| Q |
109 |
aacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactcatttccactgagctttttcccaacacagcac |
208 |
Q |
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| T |
35206428 |
aacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactcatttccactgagctttttcccaacacagcac |
35206329 |
T |
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| Q |
209 |
ttaaaacacttatccaacagttctgttatgataacaaaatttcagtttcaacatccaagctccacatcagcaaacctgcagccacggttaatcccggtag |
308 |
Q |
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| T |
35206328 |
ttaaaacacttatccaacagttctgttatgataacaaaatttcagtttcaacatccaagctccacatcagcaaacctgcatccacggttaatcccggtag |
35206229 |
T |
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| Q |
309 |
tccagctgcagcacatgcgatacaattcacgtcatggtcattagctcggagactagttttcggaacagaggaacagaaaaataaagcagcttatgagatt |
408 |
Q |
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| T |
35206228 |
tccagctgcagcacatgcaatacaattcacgtcatggtcattagcccggagactagttttcggaacagaggaacagaaaaacaaagcagcttatgagatt |
35206129 |
T |
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| Q |
409 |
catttactcgcgaaatcaaatgttttcaacacggcatgtttggttgaaattggaactgtgccaccgttgattgatcttgttctaacttcaac |
500 |
Q |
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| T |
35206128 |
cgtttactcgcgaaatcaaatgttttcaacacggcatgtttggttgaaattggaactgtgccaccgttgattgatcttgttctaacttcaac |
35206037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 43985869 - 43985827
Alignment:
| Q |
367 |
ttcggaacagaggaacagaaaaataaagcagcttatgagattc |
409 |
Q |
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| T |
43985869 |
ttcggaacagagcaacagaagaataaagcagcttacgagattc |
43985827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 43986190 - 43986069
Alignment:
| Q |
46 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
145 |
Q |
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| T |
43986190 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
43986091 |
T |
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| Q |
146 |
acatgacatgtccaaaaacagg |
167 |
Q |
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| T |
43986090 |
acaaaacatgccctaaaacagg |
43986069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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