View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17556_low_30 (Length: 252)

Name: NF17556_low_30
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17556_low_30
NF17556_low_30
[»] chr2 (2 HSPs)
chr2 (17-241)||(2038724-2038945)
chr2 (17-241)||(29963221-29963438)
[»] scaffold0172 (1 HSPs)
scaffold0172 (17-241)||(34777-34998)
[»] chr7 (5 HSPs)
chr7 (60-126)||(16931632-16931698)
chr7 (60-126)||(16937015-16937081)
chr7 (60-126)||(16955553-16955619)
chr7 (17-112)||(48187493-48187588)
chr7 (39-112)||(11283537-11283610)
[»] chr6 (2 HSPs)
chr6 (39-112)||(24540488-24540561)
chr6 (17-112)||(15277737-15277832)
[»] chr4 (2 HSPs)
chr4 (39-112)||(15418765-15418838)
chr4 (39-112)||(15425782-15425855)
[»] chr3 (1 HSPs)
chr3 (39-112)||(3224581-3224654)
[»] chr1 (2 HSPs)
chr1 (17-110)||(18153242-18153335)
chr1 (58-96)||(18901826-18901864)
[»] chr8 (1 HSPs)
chr8 (58-96)||(3897471-3897509)
[»] scaffold0655 (1 HSPs)
scaffold0655 (28-112)||(7403-7487)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 2038945 - 2038724
Alignment:
Q  17 cttacctttacaacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaa 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038945 cttacctttacaaaaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaa 2038846  T
Q  117 tctcagttacgccctaattatcactcaaggcttagattctactaaagaatactaactcactacaacttacttatttcctttttgacacgacacagtttca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038845 tctcagttacgccctaattatcactcaaggcttagattctactaaagaa---taactcactacaacttacttatttcctttttgacacgacacagtttca 2038749  T
Q  217 acttattttaacatgtataattcat 241  Q
    |||||||||||||||||||||||||    
T  2038748 acttattttaacatgtataattcat 2038724  T

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Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 29963221 - 29963438
Alignment:
Q  17 cttacctttacaacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaa 116  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  29963221 cttacctttacaacaacaatccttaaactcctcaagcagcggtctttgttc-actacatctataccttcacaattaaatatttactagcttagttttaaa 29963319  T
Q  117 tctcagttacgccctaattatcactcaaggcttagattctactaaagaatactaactcactacaacttacttatttcctttttgacacgacacagtttca 216  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963320 tctcagttacgccctaattatcactcaa---ttagattctactaaagaa---taactcactacaacttacttatttcctttttgacacgacacagtttca 29963413  T
Q  217 acttattttaacatgtataattcat 241  Q
    |||||||||||||||||||||||||    
T  29963414 acttattttaacatgtataattcat 29963438  T

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Target: scaffold0172 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 34777 - 34998
Alignment:
Q  17 cttacctttacaacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaa 116  Q
    |||||||||||||||||||||||||||||||||||  | | || ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  34777 cttacctttacaacaacaatccttaaactcctcaaacaacggtttttgttccactacatccatactttcacaattaaatgtttactaggttagttttaaa 34876  T
Q  117 tctcagttacgccctaattatcactcaaggcttagattctactaaagaatactaactcactacaacttacttatttcctttttgacacgacacagtttca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34877 tctcagttacgccctaattatcactcaaggcttagattctactaaagaa---taactcactacaacttacttatttcctttttgacacgacacagtttca 34973  T
Q  217 acttattttaacatgtataattcat 241  Q
    |||||||||||||||||||||||||    
T  34974 acttattttaacatgtataattcat 34998  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 16931632 - 16931698
Alignment:
Q  60 ctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaatctcagttac 126  Q
    |||||||||||||| || ||||||||||| ||||||||||||||| |||||||||||| ||| ||||    
T  16931632 ctttgttccactacctctataccttcacatttaaatatttactagtttagttttaaatttcacttac 16931698  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 16937015 - 16937081
Alignment:
Q  60 ctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaatctcagttac 126  Q
    |||||||||||||| || ||||||||||| ||||||||||||||| |||||||||||| ||| ||||    
T  16937015 ctttgttccactacctctataccttcacatttaaatatttactagtttagttttaaatttcacttac 16937081  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 16955553 - 16955619
Alignment:
Q  60 ctttgttccactacatccataccttcacaattaaatatttactagcttagttttaaatctcagttac 126  Q
    |||||||||| ||| || ||||||||||| ||||||||||||||| |||||||||||| ||| ||||    
T  16955553 ctttgttccattacctctataccttcacatttaaatatttactagtttagttttaaatttcacttac 16955619  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 48187493 - 48187588
Alignment:
Q  17 cttacctttacaacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    |||||||||||||||||  |||| |  ||||  ||| | | |||||||||| ||||| || ||||||||||||||||||| ||| || ||||||||    
T  48187493 cttacctttacaacaacggtcctcatgctccataagcaacggtctttgttctactacctctataccttcacaattaaatacttaataacttagttt 48187588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 11283537 - 11283610
Alignment:
Q  39 ttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    ||||||||||||||  |  ||||||||||  |||| ||  ||||||||||||||||||||||||  ||||||||    
T  11283537 ttaaactcctcaagcggtggtctttgttctcctacctctgtaccttcacaattaaatatttactcacttagttt 11283610  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 24540561 - 24540488
Alignment:
Q  39 ttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    ||||||||||||||  || ||||||| ||  |||| || |||||||||||||||||||||||||||||||||||    
T  24540561 ttaaactcctcaagcggcggtctttgctctcctacctctataccttcacaattaaatatttactagcttagttt 24540488  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 15277832 - 15277737
Alignment:
Q  17 cttacctttacaacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||| | ||  || | || ||||||||||| |||||| ||| ||| || |||||    
T  15277832 cttaccttcataacaacaatccttaaactcctcaagcagcggtcttcgctctcctccctctataccttcacagttaaatgtttgctaactcagttt 15277737  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 15418838 - 15418765
Alignment:
Q  39 ttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    ||||||||||||||  || ||||||| ||  |||| || |||||||||||||||||||||||||||||||||||    
T  15418838 ttaaactcctcaagcggcggtctttgctctcctacctctataccttcacaattaaatatttactagcttagttt 15418765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 15425855 - 15425782
Alignment:
Q  39 ttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    ||||||||||||||  || ||||||| ||  |||| || |||||||||||||||||||||| ||||||||||||    
T  15425855 ttaaactcctcaagcggcggtctttgctctcctacctctataccttcacaattaaatattttctagcttagttt 15425782  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 3224654 - 3224581
Alignment:
Q  39 ttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    ||||||||||||||  |  ||||||| ||  |||| || |||||||||||||||||||||||||||||||||||    
T  3224654 ttaaactcctcaagcggtggtctttgctctcctacctctataccttcacaattaaatatttactagcttagttt 3224581  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 18153335 - 18153242
Alignment:
Q  17 cttacctttacaacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagt 110  Q
    |||||||| || |||||  || ||||||||||||||   ||||||||| ||  |||  || | |||||||||||||||||||||||||||||||    
T  18153335 cttaccttcaccacaaccgtcgttaaactcctcaagcgacagtctttgctctcctatctctacaccttcacaattaaatatttactagcttagt 18153242  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 18901864 - 18901826
Alignment:
Q  58 gtctttgttccactacatccataccttcacaattaaata 96  Q
    |||||||||||||||| || |||||||||||||||||||    
T  18901864 gtctttgttccactacctctataccttcacaattaaata 18901826  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 3897471 - 3897509
Alignment:
Q  58 gtctttgttccactacatccataccttcacaattaaata 96  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  3897471 gtctttgttccacaacatcaataccttcacaattaaata 3897509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 7487 - 7403
Alignment:
Q  28 aacaacaatccttaaactcctcaaggagcagtctttgttccactacatccataccttcacaattaaatatttactagcttagttt 112  Q
    ||||||| ||||||||||||| |||  |  ||||||| ||  |||| || |||||||||||||||||| ||| ||| ||||||||    
T  7487 aacaacattccttaaactccttaagcggtggtctttgctctcctacctctataccttcacaattaaatgtttgctaacttagttt 7403  T

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