View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17556_low_31 (Length: 246)

Name: NF17556_low_31
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17556_low_31
NF17556_low_31
[»] chr4 (17 HSPs)
chr4 (2-193)||(22289967-22290157)
chr4 (9-190)||(33690289-33690471)
chr4 (140-207)||(16904950-16905017)
chr4 (154-206)||(18209689-18209741)
chr4 (140-207)||(44376077-44376144)
chr4 (140-203)||(46256198-46256261)
chr4 (140-207)||(52434788-52434855)
chr4 (165-207)||(35760770-35760812)
chr4 (140-206)||(39058356-39058422)
chr4 (140-206)||(47142799-47142865)
chr4 (140-205)||(12090459-12090524)
chr4 (140-205)||(30824922-30824987)
chr4 (165-206)||(31965968-31966009)
chr4 (140-205)||(33139471-33139536)
chr4 (140-205)||(37590804-37590869)
chr4 (140-205)||(37651830-37651895)
chr4 (165-206)||(53143261-53143302)
[»] chr6 (12 HSPs)
chr6 (31-206)||(15432336-15432511)
chr6 (140-206)||(1405562-1405628)
chr6 (140-206)||(3593057-3593123)
chr6 (140-205)||(13533931-13533996)
chr6 (154-206)||(162668-162720)
chr6 (140-206)||(2266940-2267006)
chr6 (140-206)||(12597264-12597330)
chr6 (140-193)||(6300721-6300774)
chr6 (140-193)||(6307531-6307584)
chr6 (140-205)||(33646106-33646171)
chr6 (165-205)||(8539742-8539782)
chr6 (165-205)||(28099597-28099637)
[»] chr7 (17 HSPs)
chr7 (56-181)||(21680989-21681114)
chr7 (60-207)||(21651462-21651609)
chr7 (5-190)||(21713499-21713688)
chr7 (140-206)||(16376544-16376610)
chr7 (2-80)||(40674298-40674376)
chr7 (140-205)||(13786334-13786399)
chr7 (140-208)||(42242151-42242219)
chr7 (140-207)||(21804570-21804637)
chr7 (140-207)||(27903415-27903482)
chr7 (140-207)||(33916945-33917012)
chr7 (2-80)||(21314280-21314358)
chr7 (140-206)||(40969055-40969121)
chr7 (140-205)||(21670145-21670210)
chr7 (165-206)||(31373645-31373686)
chr7 (138-207)||(32661031-32661100)
chr7 (140-205)||(38163339-38163404)
chr7 (165-205)||(21342012-21342052)
[»] scaffold0019 (2 HSPs)
scaffold0019 (21-193)||(177839-178010)
scaffold0019 (133-181)||(149046-149094)
[»] chr8 (13 HSPs)
chr8 (140-207)||(28583019-28583086)
chr8 (140-206)||(11725354-11725420)
chr8 (140-206)||(39997855-39997921)
chr8 (7-80)||(18850765-18850838)
chr8 (140-208)||(32110858-32110926)
chr8 (140-207)||(18175545-18175612)
chr8 (140-206)||(995814-995880)
chr8 (140-206)||(10478101-10478167)
chr8 (140-206)||(30473883-30473949)
chr8 (140-205)||(6299020-6299085)
chr8 (140-205)||(15961296-15961361)
chr8 (140-205)||(24409040-24409105)
chr8 (165-205)||(23353622-23353662)
[»] chr3 (16 HSPs)
chr3 (140-207)||(6460166-6460233)
chr3 (140-206)||(36076453-36076519)
chr3 (140-205)||(4584434-4584499)
chr3 (140-205)||(26948962-26949027)
chr3 (140-207)||(38653925-38653992)
chr3 (165-207)||(5561551-5561593)
chr3 (140-206)||(12264364-12264430)
chr3 (140-206)||(43363610-43363676)
chr3 (140-205)||(1941720-1941785)
chr3 (140-205)||(3898586-3898651)
chr3 (140-205)||(34121519-34121584)
chr3 (140-205)||(49672726-49672791)
chr3 (165-205)||(21098493-21098533)
chr3 (165-205)||(40014653-40014693)
chr3 (2-73)||(46921552-46921624)
chr3 (140-208)||(49506346-49506414)
[»] chr5 (13 HSPs)
chr5 (140-206)||(1396153-1396219)
chr5 (140-205)||(20655049-20655114)
chr5 (140-207)||(2398940-2399007)
chr5 (140-207)||(10729440-10729507)
chr5 (140-207)||(34107336-34107403)
chr5 (140-206)||(16526305-16526371)
chr5 (140-198)||(33375928-33375986)
chr5 (140-206)||(38246864-38246930)
chr5 (140-205)||(20874852-20874917)
chr5 (140-193)||(25099248-25099301)
chr5 (140-193)||(25158338-25158391)
chr5 (140-205)||(34110816-34110881)
chr5 (140-205)||(40177205-40177270)
[»] chr2 (8 HSPs)
chr2 (140-206)||(8700425-8700491)
chr2 (140-206)||(19596362-19596428)
chr2 (140-207)||(18351715-18351782)
chr2 (140-207)||(27944794-27944861)
chr2 (140-206)||(6120716-6120782)
chr2 (165-206)||(20545014-20545055)
chr2 (140-205)||(41664674-41664739)
chr2 (140-205)||(44902245-44902310)
[»] chr1 (12 HSPs)
chr1 (140-205)||(1231960-1232025)
chr1 (165-207)||(9216220-9216262)
chr1 (140-206)||(34888685-34888751)
chr1 (140-198)||(35614231-35614289)
chr1 (140-205)||(4266545-4266610)
chr1 (140-205)||(18706509-18706574)
chr1 (165-206)||(18855232-18855273)
chr1 (140-205)||(29942182-29942247)
chr1 (140-205)||(31018200-31018265)
chr1 (140-205)||(38913747-38913812)
chr1 (165-205)||(2951366-2951406)
chr1 (138-206)||(29387886-29387954)
[»] scaffold0515 (1 HSPs)
scaffold0515 (165-205)||(6061-6101)
[»] scaffold0306 (1 HSPs)
scaffold0306 (165-205)||(6071-6111)
[»] scaffold0031 (1 HSPs)
scaffold0031 (140-206)||(46438-46504)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 22290157 - 22289967
Alignment:
Q  2 gatggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagta 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  22290157 gatggtttttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacataaaaaaatacaaatataattgtatttattagta 22290058  T
Q  102 taacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 193  Q
    |||  ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  22290057 taatgttaagattttaagat-ggtatgcaatatgtcattttgtttttgccttctacattttcaatgtatatgactcgtgcggcagcacgggt 22289967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 33690289 - 33690471
Alignment:
Q  9 tttgcattgatagt--acttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagtataaca 106  Q
    ||||||||||||||  |||||| | |||||||||||||||  ||||  |||||| || |||||||   ||||||||||||||| ||| ||||  |||||     
T  33690289 tttgcattgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattccttcaaatataattgcattaattatcataacg 33690388  T
Q  107 ttaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacg 190  Q
    ||||  ||||||| | ||||| ||| |||||||||||||||| ||| ||||||||||||| |||||||| | ||| ||||||||    
T  33690389 ttaaagttttaagcttggtatataa-atgtcattttgtttttacctactacattttcgatatatatgactcctgcagcagcacg 33690471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 16905017 - 16904950
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  16905017 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 16904950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 18209689 - 18209741
Alignment:
Q  154 ctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  18209689 ctacattttgaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18209741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 44376144 - 44376077
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| ||  |||||||||    
T  44376144 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggacgatctagtta 44376077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 46256198 - 46256261
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatcta 203  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||    
T  46256198 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtcta 46256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 52434788 - 52434855
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  52434788 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 52434855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 35760770 - 35760812
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||    
T  35760770 atgtatatgactcgtgcggcagcacgggtggaaaatctagtta 35760812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 39058422 - 39058356
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||| ||| ||||||||||||    
T  39058422 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacaggtggaaaatctagtt 39058356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 47142865 - 47142799
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | |||||||||||| |||| ||||||||||| |||| |||||||    
T  47142865 tttgtttttgtctactacatctacaatgtatatgaccagtgcggcagcacgggtggaaagtctagtt 47142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 12090524 - 12090459
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  12090524 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 12090459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 30824987 - 30824922
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  30824987 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 30824922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 31966009 - 31965968
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  31966009 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 31965968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 33139536 - 33139471
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  33139536 tttgtttttgtctactaaatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 33139471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 37590869 - 37590804
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||| ||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  37590869 tttgattttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 37590804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 37651830 - 37651895
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  37651830 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 37651895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 53143302 - 53143261
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    ||||||||||||||||| |||||||||||  |||||||||||    
T  53143302 atgtatatgacccgtgcggcagcacgggtgaaaaatctagtt 53143261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 15432511 - 15432336
Alignment:
Q  31 tgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaagatgggtatgta 130  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  15432511 tgtaattttcaaagaaactttccacgatgtgtagacatgaaaaacttccaatataattgtatttattaggataacattaagattttaagttgggtatgta 15432412  T
Q  131 atatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  15432411 atatgtcactttgtttttgccttctacattttcgatgtatatgacccgtgcggccgcacgggtagaaagtctagtt 15432336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 1405628 - 1405562
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||||||||||| ||||||||||||    
T  1405628 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagtt 1405562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 3593057 - 3593123
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  3593057 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 3593123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 13533931 - 13533996
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||||||||||| |||||||||||    
T  13533931 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 13533996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 162720 - 162668
Alignment:
Q  154 ctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  162720 ctacattttgaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 162668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 2266940 - 2267006
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  2266940 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 2267006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 12597330 - 12597264
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  12597330 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 12597264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 6300774 - 6300721
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 193  Q
    ||||||||||||| ||| || | | ||||||||||||||||| |||||||||||    
T  6300774 tttgtttttgcctactagatatacaatgtatatgacccgtgcggcagcacgggt 6300721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 6307584 - 6307531
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 193  Q
    ||||||||||||| ||| || | | ||||||||||||||||| |||||||||||    
T  6307584 tttgtttttgcctactagatatacaatgtatatgacccgtgcggcagcacgggt 6307531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 33646106 - 33646171
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  33646106 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 33646171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 8539742 - 8539782
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  8539742 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 8539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 28099637 - 28099597
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  28099637 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 28099597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 21680989 - 21681114
Alignment:
Q  56 aatgtgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttct 155  Q
    |||||||| |||||| ||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||||||  ||| | ||||| |||||| || ||    
T  21680989 aatgtgtaaacatgagaaacttcaaatataattgtatttattcttataacattaaaattataagttgggtatgtgctatataattttatttttgtctact 21681088  T
Q  156 acattttcgatgtatatgacccgtgc 181  Q
    |||||| |||||||||||||||||||    
T  21681089 acatttacgatgtatatgacccgtgc 21681114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 21651462 - 21651609
Alignment:
Q  60 tgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacat 159  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||| ||| ||| | |||||| || || ||  | |||    
T  21651462 tgtaaacatgagaaacttcaaatataattgtatttattattataacattaaaattataagttgggtaagtactatctaattttgcttctgtctattgcat 21651561  T
Q  160 tttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    || | ||||||||||||| ||  | | ||||||||||  |||||||||    
T  21651562 ttacaatgtatatgacccatgttgtatcacgggtagaccatctagtta 21651609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 21713499 - 21713688
Alignment:
Q  5 ggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttcc--acaatgtgtagacatgaaaaacttcaaatataat--tgtatttattagt 100  Q
    |||||||||||| |||||||||   ||||||| |  ||||||| ||| |  | |||||||| |||||  ||||||||||||||||  ||||||||||| |    
T  21713499 ggtgtttgcatttatagtactttgaatgtagtgtataaagaaatttttcgaagaatgtgtaaacatgggaaacttcaaatataatattgtatttattatt 21713598  T
Q  101 ataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacg 190  Q
    |||||||||| ||| ||| || |||||||| ||| | |||||| ||||  || |||||| | || |||||||||||| ||| | ||||||    
T  21713599 ataacattaaaattataaaattggtatgtactatataattttgcttttatctactacatctacggtgtatatgacccatgcggtagcacg 21713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 16376610 - 16376544
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  16376610 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 40674376 - 40674298
Alignment:
Q  2 gatggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaa 80  Q
    |||||||||||||||||| || ||||  ||||||| || ||||||| |||||  |||| ||||||| ||||||||||||    
T  40674376 gatggtgtttgcattgatggttcttcgaatgtagtgtttaaagaaattttccgaaatgcgtagacacgaaaaacttcaa 40674298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 13786334 - 13786399
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  13786334 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 13786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 42242219 - 42242151
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagttac 208  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||||    
T  42242219 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttac 42242151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 21804637 - 21804570
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  21804637 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 21804570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 27903482 - 27903415
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || |||||| | | || |||||||||||||| ||||||||||| |||| ||||||||    
T  27903482 tttgtttttgtctactacatctacaatatatatgacccgtgcggcagcacgggtggaaagtctagtta 27903415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 33917012 - 33916945
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  33917012 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 33916945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 21314358 - 21314280
Alignment:
Q  2 gatggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaa 80  Q
    ||||||||||||||||||||| ||||  ||||||| || ||||||| ||| |  |||| ||||||| |||||| |||||    
T  21314358 gatggtgtttgcattgatagttcttcgaatgtagtgtttaaagaaatttttcgaaatgcgtagacacgaaaaatttcaa 21314280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 40969055 - 40969121
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    ||||||| || || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  40969055 tttgtttgtgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 40969121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 21670145 - 21670210
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || |||||| | | |||||||||||| |||| ||||||||||| |||| ||||||    
T  21670145 tttgtttttgtctactacatctacaatgtatatgacctgtgcggcagcacgggtggaaagtctagt 21670210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 31373645 - 31373686
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  31373645 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 31373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 32661031 - 32661100
Alignment:
Q  138 attttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||| ||||| || ||||| || | ||||||||||| ||||| ||||||||||||||  |||||||||    
T  32661031 attttgcttttgtctactacacttacaatgtatatgactcgtgcggcagcacgggtagacgatctagtta 32661100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 38163404 - 38163339
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  38163404 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 38163339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 21342012 - 21342052
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  21342012 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 21342052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 178010 - 177839
Alignment:
Q  21 gtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaaga 120  Q
    |||||||| | |||||||||||| ||| ||||  |||||| || |||||||   | ||||||||||||| ||| ||||  || || ||||  || ||||     
T  178010 gtacttcaaacgtagttttcaaacaaattttctgcaatgtataaacatgaattccctcaaatataattgcattaattatcatgacgttaaagttctaagc 177911  T
Q  121 tgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 193  Q
    |  |||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||  |||||||||||    
T  177910 ttcgtatataa-atgtcattttgtttttgcctgctacattttcgatatatatgacccgtgtggcagcacgggt 177839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 149094 - 149046
Alignment:
Q  133 atgtcattttgtttttgccttctacattttcgatgtatatgacccgtgc 181  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  149094 atgtcattttgttttcgcctgctacattttcgatatatatgacccgtgc 149046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 28583019 - 28583086
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||||||||||| |||||||||||||    
T  28583019 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagtta 28583086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 11725354 - 11725420
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  11725354 tttgtttttgtctactacatctacaatgtatatgacccgtgcagcagcacgggtggaaagtctagtt 11725420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 39997855 - 39997921
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  39997855 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaattctagtt 39997921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 18850838 - 18850765
Alignment:
Q  7 tgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaa 80  Q
    |||||||||||||||| ||||  ||||||| || ||||||| |||||| |||| |||||||| ||| |||||||    
T  18850838 tgtttgcattgatagttcttcgaatgtagtgtttaaagaaattttccaaaatgcgtagacataaaagacttcaa 18850765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 32110926 - 32110858
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagttac 208  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||||    
T  32110926 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttac 32110858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 18175545 - 18175612
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  18175545 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 18175612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 995880 - 995814
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  995880 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 995814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 10478101 - 10478167
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  10478101 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 10478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 30473949 - 30473883
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  30473949 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 30473883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 6299085 - 6299020
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  6299085 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 6299020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 15961296 - 15961361
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  15961296 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 15961361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 24409040 - 24409105
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||| |||||||||||| ||||||    
T  24409040 tttgtttttatctactacatctacaatgtatatgacccgtgcggcaacacgggtagaaagtctagt 24409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 23353662 - 23353622
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  23353662 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 23353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 6460233 - 6460166
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  6460233 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 6460166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 36076519 - 36076453
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  36076519 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 36076453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 4584499 - 4584434
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  4584499 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 4584434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 26948962 - 26949027
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  26948962 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 26949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 38653992 - 38653925
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  38653992 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 38653925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 5561593 - 5561551
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    ||||||||||||||||| ||||||||||||||  |||||||||    
T  5561593 atgtatatgacccgtgcggcagcacgggtagacgatctagtta 5561551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 12264364 - 12264430
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  12264364 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 12264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 43363676 - 43363610
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  43363676 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 43363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 1941785 - 1941720
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  1941785 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 1941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 3898586 - 3898651
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  3898586 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 3898651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 34121519 - 34121584
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  34121519 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 34121584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 49672726 - 49672791
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  49672726 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 49672791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 21098493 - 21098533
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  21098493 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 21098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 40014693 - 40014653
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  40014693 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 40014653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 46921624 - 46921552
Alignment:
Q  2 gatggtgtttgcattgatagtacttcagatgt-agttttcaaagaaactttccacaatgtgtagacatgaaaa 73  Q
    ||||||||||||||||||||||||||  |||| ||| || ||| |||  ||||| |||||||||||| |||||    
T  46921624 gatggtgtttgcattgatagtacttcgaatgtaagtgtttaaaaaaaaattccaaaatgtgtagacacgaaaa 46921552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 49506414 - 49506346
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagttac 208  Q
    |||||||||| || ||| || | | ||||||||||||||||| |||| |||||| |||| |||||||||    
T  49506414 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagtacgggtggaaagtctagttac 49506346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 1396153 - 1396219
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||||| |||||    
T  1396153 tttgtttttgtctgctacatctgcaatgtatatgacccgtgcggcagcacgggtggaaaatatagtt 1396219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 20655114 - 20655049
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  20655114 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20655049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 2399007 - 2398940
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  2399007 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 2398940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 10729507 - 10729440
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  10729507 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 10729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 34107403 - 34107336
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  34107403 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 34107336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 16526371 - 16526305
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  16526371 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16526305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 33375928 - 33375986
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaa 198  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| ||||    
T  33375928 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaa 33375986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 38246930 - 38246864
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  38246930 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 38246864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 20874852 - 20874917
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  20874852 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20874917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 25099301 - 25099248
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 193  Q
    |||||||||| || |||||| | | ||||||||||||||||| |||||||||||    
T  25099301 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggt 25099248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 25158391 - 25158338
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 193  Q
    |||||||||| || |||||| | | ||||||||||||||||| |||||||||||    
T  25158391 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggt 25158338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 34110816 - 34110881
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  34110816 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 34110881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 40177205 - 40177270
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  40177205 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 40177270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 8700425 - 8700491
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  8700425 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 8700491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 19596428 - 19596362
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  19596428 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 19596362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 18351715 - 18351782
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  18351715 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 18351782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 27944861 - 27944794
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  27944861 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 27944794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 6120716 - 6120782
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  6120716 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 6120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 20545014 - 20545055
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  20545014 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 20545055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 41664674 - 41664739
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  41664674 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 41664739  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 44902245 - 44902310
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  44902245 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 44902310  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 1231960 - 1232025
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| |||| | ||||||||||||||||| ||||||||||| |||| ||||||    
T  1231960 tttgtttttgtctactatatttacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 1232025  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 9216220 - 9216262
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtta 207  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||    
T  9216220 atgtatatgacccgtgcggcagcacgggtggaaagtctagtta 9216262  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 34888751 - 34888685
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  34888751 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 34888685  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 35614231 - 35614289
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaa 198  Q
    |||||||||| || |||||||| | ||||||||||||||||| | ||||||||| ||||    
T  35614231 tttgtttttgtctactacatttacaatgtatatgacccgtgcggtagcacgggtggaaa 35614289  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 4266545 - 4266610
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  4266545 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 4266610  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 18706574 - 18706509
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || |||||| | | ||||||||||| ||||| ||||||||||| |||| ||||||    
T  18706574 tttgtttttgtctactacatctacaatgtatatgactcgtgcggcagcacgggtggaaagtctagt 18706509  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 18855273 - 18855232
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  18855273 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18855232  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 29942182 - 29942247
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  29942182 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 29942247  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 31018265 - 31018200
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  31018265 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 31018200  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 38913812 - 38913747
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  38913812 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 38913747  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 2951406 - 2951366
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  2951406 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 2951366  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 29387954 - 29387886
Alignment:
Q  138 attttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||||| || ||||| || | ||||||||||||||||| |||| |||||| ||  ||||||||    
T  29387954 attttgtttttgtctactacacttacaatgtatatgacccgtgcggcagtacgggtggacgatctagtt 29387886  T

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Target: scaffold0515 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 6101 - 6061
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  6101 atgtatatgacccgtgcggcagcacgggtggaaaatctagt 6061  T

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Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 6111 - 6071
Alignment:
Q  165 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 205  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  6111 atgtatatgacccgtgcggcagcacgggtggaaaatctagt 6071  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 46438 - 46504
Alignment:
Q  140 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 206  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  46438 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 46504  T

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