View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17556_low_4 (Length: 507)
Name: NF17556_low_4
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 10284374 - 10284843
Alignment:
| Q |
18 |
caacgaatgtaatatactaatatataccagtgtgttagaagtgtttgtttaatttattgtcttttttacagctacggaagcaccagggatcatactctta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
10284374 |
caacgaatgtaatatactaatatataccagtgtgttagaagtgtttgtttaatttattgtcttttttacagctatggaagcaccagtgatcatactctta |
10284473 |
T |
|
| Q |
118 |
gctgttggatcaatatttaatattagcaagtttatttcctttcctaacaactaccacaacaagagtcaaaggccaaaaacacaagatcaatgttttgttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10284474 |
tctgttggatcaatatttaatattagcacgtttatttcctttcctaacaactaccacatcaaaagtcaaaggccaaaaacacaagatcaatgttttgttt |
10284573 |
T |
|
| Q |
218 |
tgtgaacccagaaagtcgataaaaatgaagcacacgagtcataatcagaatagatagatagatagttagttggtgctctcctatcagtatcactactgtt |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10284574 |
tgtgaacccagaaagttgataaaaatgaagcacatgagtcataatcagaatagatagatagatagttagtt----------------tatcactactgtt |
10284657 |
T |
|
| Q |
318 |
tttcaataaatatagttgaagttgtgatggcaacaatgggaagtgaagcatggaaggcccatttgggcatggcagttgtacagctattcagtgctggcta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
10284658 |
tttcaataaatatagttgaagttgtgatggcaacaatgggaagtgaagcatggaaggcccatttgggcatggcagttgtacagctattcaatggtggcta |
10284757 |
T |
|
| Q |
418 |
ccatgtcattactaaggtggcccttaatgctggagtcaaccaattagtcttctgcttctatagggatctccttgctctctctgctc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10284758 |
ccatgtcattactaaggtggcccttaatgctggagtcaaccaattagtcttctgcttctatagggatctccttgctctctttgctc |
10284843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 370 - 492
Target Start/End: Original strand, 10300933 - 10301055
Alignment:
| Q |
370 |
gaaggcccatttgggcatggcagttgtacagctattcagtgctggctaccatgtcattactaaggtggcccttaatgctggagtcaaccaattagtcttc |
469 |
Q |
| |
|
|||||||||| | | ||||||| | ||||||| |||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10300933 |
gaaggcccatctagccatggcattcttacagcttttcaatggtggataccatgtcattactaaggtggcccttaacgctggagtcaaccaattagtcttc |
10301032 |
T |
|
| Q |
470 |
tgcttctatagggatctccttgc |
492 |
Q |
| |
|
||||||||||| |||||| |||| |
|
|
| T |
10301033 |
tgcttctatagagatctcattgc |
10301055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 337 - 492
Target Start/End: Original strand, 10292441 - 10292596
Alignment:
| Q |
337 |
agttgtgatggcaacaatgggaagtgaagcatggaaggcccatttgggcatggcagttgtacagctattcagtgctggctaccatgtcattactaaggtg |
436 |
Q |
| |
|
||||||||||||||||||||| |||| | | |||||||||| |||| |||| |||||||||||| |||| || ||| ||| |||| |||||||| || |
|
|
| T |
10292441 |
agttgtgatggcaacaatgggtggtgagaccttgaaggcccatctgggtatggtagttgtacagcttttcaatggtggatactatgttattactaaagta |
10292540 |
T |
|
| Q |
437 |
gcccttaatgctggagtcaaccaattagtcttctgcttctatagggatctccttgc |
492 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
10292541 |
gccctcaattctggagtcaatcaattagtcttctgcttctatagagatctcattgc |
10292596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 412 - 497
Target Start/End: Complemental strand, 10283111 - 10283026
Alignment:
| Q |
412 |
tggctaccatgtcattactaaggtggcccttaatgctggagtcaaccaattagtcttctgcttctatagggatctccttgctctct |
497 |
Q |
| |
|
||||||||||||||| || || || |||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
10283111 |
tggctaccatgtcatcaccaaagttgcccttaatgttggagtcaaccaacttgtcttctgcttctatagagatctccttgctctct |
10283026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 495
Target Start/End: Complemental strand, 10267781 - 10267637
Alignment:
| Q |
351 |
caatgggaagtgaagcatggaaggcccatttgggcatggcagttgtacagctattcagtgctggctaccatgtcattactaaggtggcccttaatgctgg |
450 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||||| | || |||||||||| || ||| ||||| || ||||| || || |||||||||| ||| |
|
|
| T |
10267781 |
caatgggaagtgacacatggaaagcccatttggctatggcaatggtgcagctattcaatggtggttaccacgttattaccaaagtagcccttaatgttgg |
10267682 |
T |
|
| Q |
451 |
agtcaaccaattagtcttctgcttctatagggatctccttgctct |
495 |
Q |
| |
|
|| || || || || || ||| |||| || ||||| |||||||| |
|
|
| T |
10267681 |
ggttaatcagttggttttttgcctctacagagatctacttgctct |
10267637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University