View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17556_low_8 (Length: 458)
Name: NF17556_low_8
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_8 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 64 - 435
Target Start/End: Original strand, 16548 - 16928
Alignment:
| Q |
64 |
ctcagcattccgttcatctttgtttatgtttcacaattgtggtgtccgaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgc |
163 |
Q |
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| T |
16548 |
ctcagcattccgttcatctttgtttatgtttcacaattgtgatgtttgaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgc |
16647 |
T |
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| Q |
164 |
attcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcact |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16648 |
attcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcact |
16747 |
T |
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| Q |
264 |
cttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctac---------attgataatatttggttaattttgtatt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16748 |
cttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatatttggttaattttgtatt |
16847 |
T |
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| Q |
355 |
ggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
435 |
Q |
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| T |
16848 |
ggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
16928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 64 - 435
Target Start/End: Complemental strand, 1401810 - 1401430
Alignment:
| Q |
64 |
ctcagcattccgttcatctttgtttatgtttcacaattgtggtgtccgaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgc |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401810 |
ctcagcattccgttcatctttgtttatgtttcacaattgtgatgtttgaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgc |
1401711 |
T |
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| Q |
164 |
attcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcact |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401710 |
attcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcact |
1401611 |
T |
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| Q |
264 |
cttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataa---------tatttggttaattttgtatt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1401610 |
cttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatatttggttaattttgtatt |
1401511 |
T |
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| Q |
355 |
ggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
435 |
Q |
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| T |
1401510 |
ggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
1401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
| Q |
332 |
taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat |
419 |
Q |
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|||||||||||||| |||| |||| |||| |||| ||||| || ||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
1376218 |
taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat |
1376128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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