View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17556_low_9 (Length: 428)
Name: NF17556_low_9
Description: NF17556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17556_low_9 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 4236341 - 4236772
Alignment:
| Q |
6 |
agaattccacattcaaatgctatagcttttgcagtgaaaacattatcacctgtcatcagagataaagttagttaatagtcaattaagaattagtta---- |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||| || |||||| |
|
|
| T |
4236341 |
agaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctgtcatcagagataaagtatgttaatggttaattaacaactagttaggtt |
4236440 |
T |
|
| Q |
102 |
-----ttcttattatcttcttcgtattcatatagactcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaata |
196 |
Q |
| |
|
|||||||||| ||| || | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236441 |
aactattcttattatattcatcatttccatataggctcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaata |
4236540 |
T |
|
| Q |
197 |
cctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaaca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236541 |
cctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaaca |
4236640 |
T |
|
| Q |
297 |
atgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaag |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236641 |
atgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaag |
4236740 |
T |
|
| Q |
397 |
actactagccgccataccttgaataatccttt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4236741 |
actactagccgccataccttgaataatccttt |
4236772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
162 |
atcaagttatcgataaataagatattttagtaatacctgt |
201 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
163 |
tcaagttatcgataaataagatattttagtaatacctgt |
201 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 174 - 428
Target Start/End: Original strand, 6185611 - 6185865
Alignment:
| Q |
174 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatc |
273 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
|
| Q |
274 |
cttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgta |
373 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| | | ||||||||| | | |||| |||||||| |||| |||| |
|
|
| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgta |
6185810 |
T |
|
| Q |
374 |
tacgctaaagcgatgcaacgaagactactagccgccataccttgaataatccttt |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6185811 |
cacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgcttt |
6185865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 6185465 - 6185515
Alignment:
| Q |
6 |
agaattccacattcaaatgctatagcttttgcagtgaaaacattatcacct |
56 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6185465 |
agaattccacattcaaatgctatagctttcgcagtgaaaacattgtcacct |
6185515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
162 |
atcaagttatcgataaataagatattttagtaatacctgt |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
88 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
150 |
Q |
| |
|
||||||||||||||| ||| ||||| | ||| | ||||||| ||||| ||||||||||||||| |
|
|
| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University