View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17557_high_2 (Length: 452)
Name: NF17557_high_2
Description: NF17557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17557_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 199 - 434
Target Start/End: Original strand, 29317301 - 29317537
Alignment:
| Q |
199 |
attaacacgtgataaaaataataacatatgttatcatgtttaattagaaatgtacttgctaggatatctattttttacaagtacaatttt-tattcaaaa |
297 |
Q |
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| T |
29317301 |
attaacacgtgataaaaataataacatatgttatcatgtttaattagaaatgtacttgctaggatatctattttttacaagtacaattttttattcaaaa |
29317400 |
T |
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| Q |
298 |
tatgtacggcatcaatgtagacacattttacatatcttctacttactaagataacggataatttccaattttattagaccactttgagagaatgtttaac |
397 |
Q |
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| T |
29317401 |
tatgtacggcatcaatgtagacacattttacatatcttctacttactaagataacggataatttccaattttattagaccactttgagagaatgtttaac |
29317500 |
T |
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| Q |
398 |
taagctaatcatttaggaaaaagtttgatggtacaac |
434 |
Q |
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| T |
29317501 |
taagctaatcatttaggaaaaagtttgatggtacaac |
29317537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 29317043 - 29317245
Alignment:
| Q |
1 |
attgtatgatgagcacttgtgccactgctatgatagctttggctatgatctccaaatgtctcaaaaagtattggacctttcatcaatgtcatcaccattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29317043 |
attgtatgatgagcacttgtgccactgctatgatagctttggctatgatctccaaatgtctcaaaaagtattggacctttcatcagtgtcatcaccattg |
29317142 |
T |
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| Q |
101 |
cacctgaaacagttgctatagttcccaacacctttgcttgacttcgcatactttttatctttatcttctcaagtctgagcacaaagaaagaataacaaat |
200 |
Q |
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| T |
29317143 |
cacctgaaacagttgctatagttcccaacacctttgcttgacttcgcatactttttatctttatcttctcaagtctgagcacaaagaaagaataacaaat |
29317242 |
T |
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| Q |
201 |
taa |
203 |
Q |
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| T |
29317243 |
taa |
29317245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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