View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17557_high_3 (Length: 395)

Name: NF17557_high_3
Description: NF17557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17557_high_3
NF17557_high_3
[»] chr1 (3 HSPs)
chr1 (19-381)||(5734640-5734998)
chr1 (19-63)||(13295276-13295320)
chr1 (19-67)||(28324945-28324993)
[»] chr7 (8 HSPs)
chr7 (19-381)||(12643726-12644092)
chr7 (19-69)||(13384643-13384693)
chr7 (19-67)||(45914665-45914713)
chr7 (19-69)||(4226266-4226316)
chr7 (19-69)||(47945489-47945539)
chr7 (19-69)||(47950919-47950969)
chr7 (21-62)||(47558983-47559024)
chr7 (19-67)||(32934585-32934633)
[»] chr2 (3 HSPs)
chr2 (91-154)||(2846183-2846246)
chr2 (19-69)||(25624342-25624392)
chr2 (19-63)||(25623429-25623473)
[»] chr3 (2 HSPs)
chr3 (21-69)||(6956392-6956440)
chr3 (19-66)||(10294702-10294749)
[»] chr4 (6 HSPs)
chr4 (19-67)||(40316902-40316950)
chr4 (19-67)||(40326976-40327024)
chr4 (19-87)||(30641658-30641723)
chr4 (19-63)||(10408030-10408074)
chr4 (19-67)||(22718176-22718224)
chr4 (19-67)||(50504062-50504110)
[»] chr5 (2 HSPs)
chr5 (19-66)||(22870374-22870421)
chr5 (19-67)||(20153155-20153203)
[»] chr8 (1 HSPs)
chr8 (19-67)||(25124800-25124848)
[»] chr6 (3 HSPs)
chr6 (19-63)||(8089584-8089628)
chr6 (19-67)||(22503011-22503059)
chr6 (19-67)||(31407115-31407163)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 5734998 - 5734640
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatccttaatcttagatcttcatctctacaccttcactataattcactttcaccaa 118  Q
    |||||||||||||||| ||||   || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5734998 tcaaattaacaaaatggcatgagaatagacaaaaatgccctcatcatc-ttcatcttagatcttcatctctacaccttcactataattcactttcaccaa 5734900  T
Q  119 ttccaattcttcatcaacattcttcggattcttcttctcaatagaacaattttattcaacatgaaataattcaaagggatgttggactcggacttcagca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5734899 ttccaattcttcatcaacattcttcggattcttcttctcaatagaacaattttattcaacatgaaataattcaaagggatgttggactcggacttcagca 5734800  T
Q  219 accggtaagccttttgacagagaattcacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaag 318  Q
    ||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5734799 accggtaagtcttttg---gagaattcacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaag 5734703  T
Q  319 aacactatgcaaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaat 381  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5734702 aacaccatgcaaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaat 5734640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 13295276 - 13295320
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatc 63  Q
    |||||||| |||||||||||||| || ||||||||| ||||||||    
T  13295276 tcaaattagcaaaatgacatggaaatagacaaaaataccctcatc 13295320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 28324945 - 28324993
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| ||||||| |||||| |||||||||||| ||||| ||||||    
T  28324945 tcaaattagcaaaatggcatggaaatggacaaaaataccctcgtcatcc 28324993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 12644092 - 12643726
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatccttaatcttagatcttcatctctacaccttcactataattcactttcaccaa 118  Q
    |||||||| ||||||| ||||   ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  12644092 tcaaattagcaaaatggcatgagaatgaacaaaaatgccctcatcatccttcatcttagatcttcatctctacaccttcagtataattcactttcaccaa 12643993  T
Q  119 ttccaattcttcatcaacattcttcggat---tcttcttctcaatagaacaattttattcaacatgaaataattcaaagggatgttggactcggacttca 215  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  12643992 ttccaattcttcatcaacattcttcggatgcttcttcttctcaatagaacaattttattcaacataaaataattcaaagggacgttggactcggacttca 12643893  T
Q  216 gcaaccggtaagcct-tttgacagagaattcacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaa 314  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12643892 gcaacaggtaagcctctttgacagagaattcacaatcatgattttttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaa 12643793  T
Q  315 caagaacactatgcaaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12643792 caagaacactatgcaaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaat 12643726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 13384643 - 13384693
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcctt 69  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  13384643 tcaaattaacaaaatgacatgggaatggacaaaaataccctcatcatcctt 13384693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 45914665 - 45914713
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  45914665 tcaaattagcaaaatgacatgggaatggacaaaaataccctcatcatcc 45914713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 4226266 - 4226316
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcctt 69  Q
    |||||||| ||||||| |||||  |||||||||||| ||||||||||||||    
T  4226266 tcaaattagcaaaatggcatgggaatggacaaaaataccctcatcatcctt 4226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 47945489 - 47945539
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcctt 69  Q
    |||||||||||||||| ||| |  |||||||||||| ||||||||||||||    
T  47945489 tcaaattaacaaaatggcataggaatggacaaaaataccctcatcatcctt 47945539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 47950919 - 47950969
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcctt 69  Q
    |||||||||||||||| ||| |  |||||||||||| ||||||||||||||    
T  47950919 tcaaattaacaaaatggcataggaatggacaaaaataccctcatcatcctt 47950969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 47559024 - 47558983
Alignment:
Q  21 aaattaacaaaatgacatggagatggacaaaaatgccctcat 62  Q
    |||||| |||||||||||||| |||||||||||| |||||||    
T  47559024 aaattagcaaaatgacatggaaatggacaaaaataccctcat 47558983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 32934633 - 32934585
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  32934633 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 32934585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 2846246 - 2846183
Alignment:
Q  91 caccttcactataattcactttcaccaattccaattcttcatcaacattcttcggattcttctt 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2846246 caccttcactataattcactttcaccaattccaattcttcatcaacattcttcacattcttctt 2846183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25624392 - 25624342
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcctt 69  Q
    |||||||||||||||| |||||  |||||||||||| ||||||||||||||    
T  25624392 tcaaattaacaaaatggcatgggaatggacaaaaataccctcatcatcctt 25624342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 25623429 - 25623473
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatc 63  Q
    |||||||||||||||| |||||  |||||||||||| ||||||||    
T  25623429 tcaaattaacaaaatggcatgggaatggacaaaaataccctcatc 25623473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 6956392 - 6956440
Alignment:
Q  21 aaattaacaaaatgacatggagatggacaaaaatgccctcatcatcctt 69  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  6956392 aaattaacaaaatgacatgggaatggacaaaaataccctcatcatcctt 6956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 10294702 - 10294749
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatc 66  Q
    |||||||| |||||||||||||| ||| |||||||| |||||||||||    
T  10294702 tcaaattagcaaaatgacatggaaatgtacaaaaataccctcatcatc 10294749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40316950 - 40316902
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  40316950 tcaaattagcaaaatgacatgggaatggacaaaaataccctcatcatcc 40316902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40327024 - 40326976
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  40327024 tcaaattagcaaaatgacatgggaatggacaaaaataccctcatcatcc 40326976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 30641658 - 30641723
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatccttaatcttagatcttcatct 87  Q
    |||||||| ||||||| |||||  |||||||||| | |||||||||||||   ||||||||||||||||    
T  30641658 tcaaattagcaaaatgtcatgggaatggacaaaattaccctcatcatcct---tcttagatcttcatct 30641723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 10408030 - 10408074
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatc 63  Q
    |||||||| ||||||| |||||| |||||||||||| ||||||||    
T  10408030 tcaaattagcaaaatggcatggaaatggacaaaaataccctcatc 10408074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 22718224 - 22718176
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  22718224 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 22718176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 50504110 - 50504062
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  50504110 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 50504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 22870421 - 22870374
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatc 66  Q
    |||||||| |||||||||||||  |||||||||||| |||||||||||    
T  22870421 tcaaattagcaaaatgacatgggaatggacaaaaataccctcatcatc 22870374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 20153203 - 20153155
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  20153203 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 20153155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 25124848 - 25124800
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  25124848 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 25124800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 8089584 - 8089628
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatc 63  Q
    |||||||||||||||| |||||  |||||||||||| ||||||||    
T  8089584 tcaaattaacaaaatggcatgggaatggacaaaaataccctcatc 8089628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 22503059 - 22503011
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  22503059 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 22503011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 31407163 - 31407115
Alignment:
Q  19 tcaaattaacaaaatgacatggagatggacaaaaatgccctcatcatcc 67  Q
    |||||||| |||||||||||||  |||||||||||| ||||| ||||||    
T  31407163 tcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 31407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University