View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17557_high_5 (Length: 262)
Name: NF17557_high_5
Description: NF17557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17557_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 31524667 - 31524434
Alignment:
| Q |
12 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524667 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
31524568 |
T |
|
| Q |
112 |
aatcacaataccatattcaaattaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctgnnnnnnnncgctattgcaggtgcta |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
31524567 |
aatcacaataccatattcaaactaagcttggttataatggaaactatgttgaagatgttgtttaagtttatgctgttttttttcgctattgcaggtgcta |
31524468 |
T |
|
| Q |
212 |
tggtagccaatgtacaaggcttggaaccttgttg |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
31524467 |
tggtagccaatgtacaaggcttggaaccttgttg |
31524434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 31515920 - 31515686
Alignment:
| Q |
12 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31515920 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttatttataaataagtacacattgttgtaatatatc |
31515821 |
T |
|
| Q |
112 |
aatcacaataccatattcaaattaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctg-nnnnnnnncgctattgcaggtgct |
210 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31515820 |
aatcacaataccatattcaaactaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctgtttttttttcgctattgcaggtgct |
31515721 |
T |
|
| Q |
211 |
atggtagccaatgtacaaggcttggaaccttgttg |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
31515720 |
atggtagccaatgtacaaggcttggaaccttgttg |
31515686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 31522320 - 31522088
Alignment:
| Q |
12 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31522320 |
ttaaggcgttcacattattaacatcaaaatatttctagttatgatatttcaaaagattttctctttgcttataaataagtacacattgttgtaatatatc |
31522221 |
T |
|
| Q |
112 |
aatcacaataccatattcaaattaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctgnnnnnnnncgctattgcaggtgcta |
211 |
Q |
| |
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| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31522220 |
actcacaatacca-attcaaactaatcttggttataatggaaactatgttgaagatattgtttaagtttatgctgttttttctcgctattgcaggtgcta |
31522122 |
T |
|
| Q |
212 |
tggtagccaatgtacaaggcttggaaccttgttg |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
31522121 |
tggtagccaatgtacaaggcttggaaccttgttg |
31522088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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