View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17557_low_1 (Length: 481)
Name: NF17557_low_1
Description: NF17557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17557_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 43 - 470
Target Start/End: Original strand, 36274930 - 36275357
Alignment:
| Q |
43 |
atatgtgatttagttcccacttttaaaattgttcagttgctttctcttagttacaaaatacaaacaataaattaacatttgctgctcttggcaatttggt |
142 |
Q |
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| T |
36274930 |
atatgtgatttagtttccacttttaaaattgttcagttgctttctattagttacaaaatacaaacaataaattaacatttgctgctcttggtaatttggt |
36275029 |
T |
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| Q |
143 |
ggtttttctttttctttgaggtaatgagcatccatgcaattattatatatcgttttcagatttccagtgatctttgtgatggtaacaggacagtgccaaa |
242 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36275030 |
ggattttctttttctttgaggtaatgagcatccatgcaattattatatatcgttttcagatttccagtgatctttgtgatggtaacaggacagtgccaaa |
36275129 |
T |
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| Q |
243 |
ccgatgcatgccttatgttgctggtcctcctctcattagtgcctattgtttgtagagtcaatagtaagatttataaaagtcgtcactccaaattgagttt |
342 |
Q |
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| T |
36275130 |
ccgatgcatgtcttatgttgctggtcctcctctcattagtgcctattgtttgtagagtcaatagtaagatttataaaagtcgtcactccaaattgagttt |
36275229 |
T |
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| Q |
343 |
ggatcttctcaaattctagcaggatagagaaagaacaaatctagtaaatgaagaggagtttgaagtatattgttttagttatgaagaagaaatctatctt |
442 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36275230 |
ggatcttctcaaattgtagcaggatagagaaagaacaaatctagtagatgaagaggagtttgaagtatattgttttagttatgaagaagaaatctatctt |
36275329 |
T |
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| Q |
443 |
acttatctatcattttatatattcttgg |
470 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
36275330 |
acctatctatcattttatatattcttgg |
36275357 |
T |
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