View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17557_low_8 (Length: 238)
Name: NF17557_low_8
Description: NF17557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17557_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 22735203 - 22735000
Alignment:
| Q |
16 |
caattacaatacttaattacttatacatgacataagtcataagccattttattaaaattacaaaagagagaaaaagatactttacaactttctaatgttg |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
22735203 |
caattaaaatacttaattacttatacatgacataagacataagccactttattaaaattacaaaagagagaaaaagatgcttaacaactttctaatgttg |
22735104 |
T |
|
| Q |
116 |
ctttaggtaatgcacatcatgtgcttgaagagatgcttcaccttgccatgttgttttcaaataaatgaaaccttaagataaggtataggatattaataaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
22735103 |
ctttaggtaatgcacatcatgtgcttgaagagatgcttcaccttgccatgttgttttcaaataaatgaagcgttaagataaggtataggatattaataaa |
22735004 |
T |
|
| Q |
216 |
actt |
219 |
Q |
| |
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|||| |
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| T |
22735003 |
actt |
22735000 |
T |
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