View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17558_low_1 (Length: 403)
Name: NF17558_low_1
Description: NF17558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17558_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 28987964 - 28988356
Alignment:
| Q |
1 |
cagcgtgtggttacattcaattacttccattttctgaaattagtagctgtgtcagtgtcagtgtttcatagggagtgagttgttactagtaagttctgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28987964 |
cagcgtgtggttacattcaattacttccattttctaaaattagtagctgtgtcagtgtcagtgtttcataggtagtgagttgttactagtaagttctgaa |
28988063 |
T |
|
| Q |
101 |
gcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacacaacacctacacataaatcacctgtgtcgacgtatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988064 |
gcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacacaacacctacacataaatcacctgtgtcgacgtatc |
28988163 |
T |
|
| Q |
201 |
cgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagctttaaataattgtagtgtggtgggggaaaaatacctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988164 |
cgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagctttaaataattgtagtgtggtgggggaaaaatacctt |
28988263 |
T |
|
| Q |
301 |
ttcttctttcttttctctgaggttgtgtacattgattatgttaatgatgcttccgggttctgattttgagccctgttattttgtggctgatgatgt |
396 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988264 |
ttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgattttgagccctgttattttgtggctgatgatgt |
28988356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 2468485 - 2468521
Alignment:
| Q |
6 |
tgtggttacattcaattacttccattttctgaaatta |
42 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
2468485 |
tgtggttacattcaattacttccattttcttaaatta |
2468521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 27131685 - 27131721
Alignment:
| Q |
6 |
tgtggttacattcaattacttccattttctgaaatta |
42 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |
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|
| T |
27131685 |
tgtggttacattcaattacttccattttcttaaatta |
27131721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 9018882 - 9018918
Alignment:
| Q |
6 |
tgtggttacattcaattacttccattttctgaaatta |
42 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |
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|
| T |
9018882 |
tgtggttacattcaattactttcattttctcaaatta |
9018918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 44572654 - 44572683
Alignment:
| Q |
188 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
217 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
44572654 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
44572683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 38685311 - 38685340
Alignment:
| Q |
6 |
tgtggttacattcaattacttccattttct |
35 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
38685311 |
tgtggttacattcaattacttccattttct |
38685340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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