View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17558_low_4 (Length: 201)
Name: NF17558_low_4
Description: NF17558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17558_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 45729356 - 45729445
Alignment:
| Q |
16 |
gtctccacccccatcctccaccatcgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctatattcttcg |
105 |
Q |
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| T |
45729356 |
gtctccaccaccatcctccaccattgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcg |
45729445 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 45725196 - 45725254
Alignment:
| Q |
45 |
accatctccatcgccccagaaaaactaaatataatctccatgaaacctcctatattctt |
103 |
Q |
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| T |
45725196 |
accatctccatcgcctcagaaaaacaaaatataatctccatgaaaccacctattttctt |
45725254 |
T |
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