View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17559_high_1 (Length: 500)
Name: NF17559_high_1
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 36023156 - 36023629
Alignment:
| Q |
11 |
gagtagcaaaggtcaatgctcttcaaattgccaagcttctgtagcatgaaacaaacatcacattgtttagagaccattaaaattaattcatagtcaagca |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36023156 |
gagtaacaaaggtcaatgctcttcaaattgccaagcttctgtagcatgaaacaaacatcacattgtttagagaccattaaaattaattcatagtcaagca |
36023255 |
T |
|
| Q |
111 |
tgagtcttaactaaaagagaatctgaacataattaaccatataaagaagatagggatatcagcctagctgcagcgtgactgtgtgaatgggcttatagga |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36023256 |
tgagtcttaactaaaagagaatctaaacataattaaccatataaagaagatagggatatcagcctagctgcagcgtgactgtgtcaatgggcttatagga |
36023355 |
T |
|
| Q |
211 |
atgcacctttcaaaattatcaaacacattaattaatttgtacctgagttccatcccaaagcttttttagcttgctaccgcgcatttcaagtcttacaagc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36023356 |
atgcacctttcaaaattatcaaacacattaattaatttgtacctgaattccatcccaaagcttttttagcttgctaccgcgcatttcaagtcttacaagc |
36023455 |
T |
|
| Q |
311 |
cattcagcagaaaaggtcgatggcaaggactcaagtggaaatccaacccaataaaggtgtctcagtttatcagataaccactcaagaccttggaggaagt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36023456 |
cattcagcagaaaaggtcgatggcaaggactcaagtggaaatccaacccaataaaggtgtctcagtttatcagataaccactcaagaccttggaggaagt |
36023555 |
T |
|
| Q |
411 |
gcacattgtagtgttttccctcatctggcagctgcattttgttgaatatatgaagacatcttaagtttgtcatg |
484 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36023556 |
gcacattgtagtgttttccttcatctggcagctgcattttgttgaatatatgaagacatcttaagttggtcatg |
36023629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 36002271 - 36002326
Alignment:
| Q |
231 |
aaacacattaattaatttgtacctgagttccatcccaaagcttttttagcttgcta |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||| || |||||| |
|
|
| T |
36002271 |
aaacacattaattaatttgtacctgaattccatcccatagctttttaagtttgcta |
36002326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 421
Target Start/End: Complemental strand, 12897254 - 12897068
Alignment:
| Q |
235 |
acattaattaatttgtacctgagttccatcccaaagcttttttagcttgctaccgcgcatttcaagtcttacaagccattcagcagaaaaggtcgatggc |
334 |
Q |
| |
|
|||||||| ||| ||||||||| || ||| |||||||||||| ||||||||| |||||| |||| |||||||||||| ||| ||||||| |||||| |
|
|
| T |
12897254 |
acattaataaatgtgtacctgaatttcattccaaagctttttaagcttgctatggcgcatgctaagttgtacaagccattcggcacaaaaggttgatggc |
12897155 |
T |
|
| Q |
335 |
aaggactcaagtggaaatccaacccaataaaggtgtctcagtttatcagataaccactcaagaccttggaggaagtgcacattgtag |
421 |
Q |
| |
|
|| ||||||||||| ||| | ||||||||||||| |||| ||||||||| ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
12897154 |
aaagactcaagtgggaatgcttcccaataaaggtgcctcaatttatcagacaaccattcaagaccttcaaggaggtgcacattgtag |
12897068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 401
Target Start/End: Original strand, 16121410 - 16121580
Alignment:
| Q |
231 |
aaacacattaattaatttgtacctgagttccatcccaaagcttttttagcttgctaccgcgcatttcaagtcttacaagccattcagcagaaaaggtcga |
330 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||| | ||| |||| ||||||| || || | ||||||| || |
|
|
| T |
16121410 |
aaacacattaattaatttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttctacaagcttttgaggacaaaaggttga |
16121509 |
T |
|
| Q |
331 |
tggcaaggactcaagtggaaatccaacccaataaaggtgtctcagtttatcagataaccactcaagacctt |
401 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
16121510 |
tggcaaagactcaagtggaaatgattcccaatgaaggtagctcaatttatcagacaaccactcaagacctt |
16121580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 401
Target Start/End: Complemental strand, 16337758 - 16337588
Alignment:
| Q |
231 |
aaacacattaattaatttgtacctgagttccatcccaaagcttttttagcttgctaccgcgcatttcaagtcttacaagccattcagcagaaaaggtcga |
330 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||| | ||| |||| |||||| || |||| ||||||| || |
|
|
| T |
16337758 |
aaacacattaattaatttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttgtacaaggttttgagcacaaaaggttga |
16337659 |
T |
|
| Q |
331 |
tggcaaggactcaagtggaaatccaacccaataaaggtgtctcagtttatcagataaccactcaagacctt |
401 |
Q |
| |
|
|||||| || |||||||||||| |||||| ||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
16337658 |
tggcaaagattcaagtggaaatgattcccaatgaaggtacctcaatttatcagacaaccactcaagacctt |
16337588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 16121241 - 16121297
Alignment:
| Q |
35 |
aaattgccaagcttctgtagcatgaaacaaacatcacattgtttagagaccattaaa |
91 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||||||||||||||| ||| | ||||||| |
|
|
| T |
16121241 |
aaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaa |
16121297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 16337923 - 16337867
Alignment:
| Q |
35 |
aaattgccaagcttctgtagcatgaaacaaacatcacattgtttagagaccattaaa |
91 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||||||||||||||| ||| | ||||||| |
|
|
| T |
16337923 |
aaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaa |
16337867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University