View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_high_11 (Length: 275)
Name: NF17559_high_11
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 38196007 - 38195732
Alignment:
| Q |
1 |
ccgaacgaagattatgtcaagtgtaacgttgatgcggcgctatttggtgaacaaaggtgctttggaattggtatgtgtctcaggaatcatcaaggccatt |
100 |
Q |
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| T |
38196007 |
ccgaacgaagattatgtcaagtgtaacgttgatgcggcgctatttggtgaacaaaggtgctttggaattggtatgtgtctcaggaatcatcaaggccatt |
38195908 |
T |
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| Q |
101 |
ttattaaagcattaactaaatggtatgaaggtactcctcctccgcaagaagctgaagcgttgggactaagagatgctattatttggcttggtcatttggg |
200 |
Q |
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| T |
38195907 |
ttattaaagcattaactaaatggtatgaaggtactcctcctccgcaagaagctgaagcgttgggactaagagatgctattatttggcttggtcatttggg |
38195808 |
T |
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| Q |
201 |
tatg-caaaagtgcatactgagctagattgcaagctagtggtagaaagcattggtgacataactaataaccaatct |
275 |
Q |
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| T |
38195807 |
tatgtcaaaagtgcatactgagctagattgcaagctagtggtagaaagcattggtgacataactaataaccaatct |
38195732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 47814173 - 47813994
Alignment:
| Q |
88 |
catcaaggccattttattaaa-gcattaactaaatggtatgaaggtactcctcctccgcaagaagctgaagcgttgggactaagagatgctattatttgg |
186 |
Q |
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| T |
47814173 |
catcaaggccattttattaaaagcattaactaaatggcatgaaggtactcctcctccgcaagaagctgaagcgttgggactaagagatgctattatttgg |
47814074 |
T |
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| Q |
187 |
cttggtcatttgggtatg-caaaagtgcatactgagctagattgcaagctagtggtagaaagcattggtgacataactaa |
265 |
Q |
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| T |
47814073 |
cttggtcatttgggtatgtcaaaagtgcatattgagctagattgcaagctagtggtagaaagcattggtgacagaactaa |
47813994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 25790497 - 25790759
Alignment:
| Q |
15 |
tgtcaagtgtaacgttgatgcggcgctatttggtgaacaaaggtgctttggaattggtatgtgtctcaggaatcatca-aggccattttattaaagcatt |
113 |
Q |
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| T |
25790497 |
tgtcaagtgtaatattgatgtagcactatttggtgactaaaggtgctttgaaattggtatgtgtctcatgcatttttttagatcattttattaaagtatt |
25790596 |
T |
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| Q |
114 |
aactaaatggtatgaaggtactcctcctccgcaagaagctgaagcgttgggactaagagatgctattatttggcttggtcatttgggtatg-caaaagtg |
212 |
Q |
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| T |
25790597 |
aacaaagtggtatgaaggtactcctcctccatcagaaggagaagcgttgggattaagagatgctatttcttgacttggtcaatcaggtttgacaaaagtg |
25790696 |
T |
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| Q |
213 |
cata--ctgagctagattgcaagctagtggtagaaagcattggtgacataactaataaccaat |
273 |
Q |
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| T |
25790697 |
cataatttgagctagagtgtaagctagtgatagaaatcatttttgatagaactaataaccaat |
25790759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 29122952 - 29123109
Alignment:
| Q |
1 |
ccgaacgaagattatgtcaagtgtaacgttgatgcggcgctatttggtgaacaaaggtgctttggaattggtatgtgtctcaggaatcatcaaggccatt |
100 |
Q |
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| T |
29122952 |
ccgaacgaagattatgtcaagtgtaacgttgacgcggcgctatttggtgaacaaaggtgctttggaattggtatgtttctcaggaatcatcaaggccatt |
29123051 |
T |
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| Q |
101 |
ttattaaagcattaactaaatggtatgaaggtactcctcctccgcaagaagctgaagc |
158 |
Q |
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| T |
29123052 |
ttattaaagcattaactaaatggtatgaaggtactcctcctccgcacgaagctgaagc |
29123109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 46 - 252
Target Start/End: Original strand, 25500671 - 25500878
Alignment:
| Q |
46 |
ggtgaacaaaggtgctttggaattggtatgtgtctcaggaatcatcaaggccattttattaaagcattaactaaatggtatgaaggtactcctcctccgc |
145 |
Q |
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| T |
25500671 |
ggtgaacaacgctgttttggttttggtatgtgtattaggaattctcgaggtcattttataaaagcgttatctaagtggtatgaaggtactcctccaccat |
25500770 |
T |
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| Q |
146 |
aagaagctgaagcgttgggactaagagatgctattatttggcttggtcatttgggtatgc-aaaagtgcatactgagctagattgcaagctagtggtaga |
244 |
Q |
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||||| ||||||||||| |||||||||||||| | ||||||||||| ||| | ||| ||||||||||| |||||||||||||||||||||||| || |
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| T |
25500771 |
tggaagcagaagcgttgggtttaagagatgctattttatggcttggtcaaatggctctgccaaaagtgcatattgagctagattgcaagctagtggttga |
25500870 |
T |
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| Q |
245 |
aagcattg |
252 |
Q |
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| T |
25500871 |
cagcattg |
25500878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 11468648 - 11468767
Alignment:
| Q |
142 |
ccgcaagaagctgaagcgttgggactaagagatgctattatttggcttggtcatttgggtatg-caaaagtgcatactgagctagattgcaagctagtgg |
240 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| | |||||||||| |||||||||| |
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| T |
11468648 |
ccgcaataagctgaagcgttgggactaagagatgctattgtttgg-------------gtatgtcaaaagtgcatattaagctagattgtaagctagtgg |
11468734 |
T |
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| Q |
241 |
tagaaagcattggtgacataactaataaccaatc |
274 |
Q |
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| T |
11468735 |
tagaaagcattgttgacataact-ataaccaatc |
11468767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 52176261 - 52176355
Alignment:
| Q |
46 |
ggtgaacaaaggtgctttggaattggtatgtgtctcaggaatcatcaaggccattttattaaagcattaactaaatggtatgaaggtactcctcc |
140 |
Q |
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| T |
52176261 |
ggtgaacaacggtgttttggttttggtatgtgtattaggaattctcaaggtcattttataaaagtgttaactaagtggtatgaaggcactcctcc |
52176355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 6508300 - 6508228
Alignment:
| Q |
170 |
gagatgctattatttggcttggtcatttggg--tatgcaaaagtgcatactgagctagattgcaagctagtggt |
241 |
Q |
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| T |
6508300 |
gagatgctattttatggcttggtaatttaggcctat-caaaagtgcatattgagctagattgtaagctagtggt |
6508228 |
T |
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