View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_high_2 (Length: 495)
Name: NF17559_high_2
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Original strand, 42086647 - 42087121
Alignment:
| Q |
10 |
ataattctctacctatcaaatcaagcctacaaaacttcannnnnnngagcttggacattctccttgaccttgc------atgttttgaaccattctttgt |
103 |
Q |
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| T |
42086647 |
ataattctctacctatcaaatcaagcctacaaaacttcatttttttgagcttggacattctccttgaccttgcaattgcatgttttgaaccattctttgt |
42086746 |
T |
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| Q |
104 |
tcctttttcaaggaaacaccaaacattccaacatagaagaacatggtgcaattttcaagtccaaaaatccaaccattgagaactattgcatgattggtct |
203 |
Q |
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| T |
42086747 |
tcctttttcaaggaaacaccaaacattgcaacatagaagaacatggtgcaattttcaagtccaaaaatccaaccattgagaactattgcatgattggtct |
42086846 |
T |
|
| Q |
204 |
aacataccacatggatcaacattgtaccatttttcaagtgttgttgtcaagggaatttctgcatgatcatcatttcttaaaagttgatttcctctgtcct |
303 |
Q |
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| T |
42086847 |
aacataccacatggatcaacattgtaccatttttcaagtgttgttgtcaagggaatttctgcatgatcatcatttcttaaaagttgatttcctctgtcct |
42086946 |
T |
|
| Q |
304 |
caactttctctgtccatgttgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcatttgaaaaccttggctttgtttc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42086947 |
caactttctctgtccatgttgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcatttgaaaacctttgctttgtttc |
42087046 |
T |
|
| Q |
404 |
ttcaaacctgctattgttgtatccatttcctgaaccaccatcttctgtgctattttcctttgcttcccttcctcc |
478 |
Q |
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| T |
42087047 |
ttcaaacctgctattgttgtatccatttcttgaaccaccatcttctgtgctattttcctttgcttcccttcctcc |
42087121 |
T |
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