View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_high_3 (Length: 476)
Name: NF17559_high_3
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Original strand, 2658388 - 2658839
Alignment:
| Q |
10 |
atgaacaaggacattgtttttcatgaagttcagattcatgaccttggtttgaaattgagatatggtactggatgttgatgttgataaatttgttgattta |
109 |
Q |
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| T |
2658388 |
atgaacaaggacattgtttttcatgaagttcagattcatgaccttggtttgaaattgagatatggtactggatgttgatgttgataaatttgttgattaa |
2658487 |
T |
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| Q |
110 |
gattgtagagtcaattattttgtagctggtaactgtcatgacttaatggttttgcaatattctgcttatcattgtaatttctattatgaacacataaagc |
209 |
Q |
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| T |
2658488 |
gattgtagagtcaattattttgtagctggtaactgtcatgacttaatggttttgcaatattctgcttatcattgtaatttctattatgaacacataaagc |
2658587 |
T |
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| Q |
210 |
atgcacaagtattagtgtttatgaattgttggttgttgggggtgaaagtactcgcaattatgcatgaatatcgatttctagttgtaaacaatagccctta |
309 |
Q |
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| T |
2658588 |
atgcacaagtattagtgtttatgaattgttggttgttgggggtgaaaatactcgcaattatgcatgaatatcgatttctagttgtaaacaatagccctta |
2658687 |
T |
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| Q |
310 |
tttgtcatctttggaaaattggatcttctcgggattagtctgaaaatctgtctagtatgtacattttaatctcttaagtttgtgtaagggggtccctttt |
409 |
Q |
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| T |
2658688 |
tttgtcatctttggaaaattggatcttctcgggattagtctgaaaatctgtctagtatgtacattttaatctcttaagtttgtgtaagggggtccctttt |
2658787 |
T |
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| Q |
410 |
cctaatctgcagtcagcagtggatcttctcgggagcgggtaggtgtcatggc |
461 |
Q |
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| T |
2658788 |
cctaatctgcagtcagcagtggatcttctcgggagcaggtaggtgtcatggc |
2658839 |
T |
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