View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_low_10 (Length: 287)
Name: NF17559_low_10
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 42086670 - 42086412
Alignment:
| Q |
1 |
ttgatttgataggtagagaattatggtagcctctctcaattcatttgtttagagatttggaagaagaaggaataatgtgaaaatttctctgttttgtgca |
100 |
Q |
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| T |
42086670 |
ttgatttgataggtagagaattatgatagcctctctcaattcatttgtttagagatttggaagaagaaggaataatgtgaaaatttctctgttttgtgca |
42086571 |
T |
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| Q |
101 |
atgcacacgcttgcatgccttttccatccatttgcttgtgtcagtgtgatgtattttaccatttctagttttataactttagctaccaccttgttaattt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42086570 |
atgcacacgcttgcatgccttttccattcatttgcttgtgtcagtgtgatgtgttttaccatttctagttttataactttagctaccaccttgttaattt |
42086471 |
T |
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| Q |
201 |
gtatgaccattgtaacatatatatgacttggactcacacataacaaaggggcaaaataa |
259 |
Q |
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| T |
42086470 |
gtatgaccattgtaacatatatatgacttggactcacacataacataggtgcaaaataa |
42086412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 16512588 - 16512621
Alignment:
| Q |
254 |
aaataattagactattacttttcccaccctatgc |
287 |
Q |
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| T |
16512588 |
aaataataagactattacttttcccaccctatgc |
16512621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 23348336 - 23348364
Alignment:
| Q |
259 |
attagactattacttttcccaccctatgc |
287 |
Q |
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| T |
23348336 |
attagactattacttttcccaccctatgc |
23348364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 29823313 - 29823285
Alignment:
| Q |
258 |
aattagactattacttttcccaccctatg |
286 |
Q |
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| T |
29823313 |
aattagactattacttttcccaccctatg |
29823285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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