View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_low_4 (Length: 445)
Name: NF17559_low_4
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_low_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 36183617 - 36183496
Alignment:
| Q |
160 |
ttctcatgttcctcttgtaaaatacagtttgtgattttcatttttcgaaataaagaaaaagttaaatattgtcatttacatcaccgtcatcgcaatacat |
259 |
Q |
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| T |
36183617 |
ttctcatgttcatcttataaaatacagtttgcgattttcgtttttagaaagaaagaaaaagttaaatattgccaattacatcaccttcattgcaatacct |
36183518 |
T |
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| Q |
260 |
ttctccatatatacaaatccac |
281 |
Q |
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| T |
36183517 |
tcctccatatacacagatccac |
36183496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 36183738 - 36183690
Alignment:
| Q |
38 |
acaacaacccattcggttgttccacttcatcatctgaatttacatatta |
86 |
Q |
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| T |
36183738 |
acaacaactcatttggttgtttcacttcatcatctccatttacatatta |
36183690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 24360676 - 24360615
Alignment:
| Q |
384 |
aaattaatcttaatccctaccatttatgagcttcatcatccaacctagagtttcagaaaatt |
445 |
Q |
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| T |
24360676 |
aaattaatcttaatccctaccatttatgagcttcatcatccaacctagagtttcagaaaatt |
24360615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 24360445 - 24360387
Alignment:
| Q |
387 |
ttaatcttaatccctaccatttatgagcttcatcatccaacctagagtttcagaaaatt |
445 |
Q |
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| T |
24360445 |
ttaatcttaatccctacccttcatgagcttcatcatccaacctagaatttcagaaaatt |
24360387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 24360853 - 24360795
Alignment:
| Q |
387 |
ttaatcttaatccctaccatttatgagcttcatcatccaacctagagtttcagaaaatt |
445 |
Q |
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| T |
24360853 |
ttaattttaaaccctaccattcatgagcatcattatccaacctagagtttcagaaaatt |
24360795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 27452135 - 27452077
Alignment:
| Q |
387 |
ttaatcttaatccctaccatttatgagcttcatcatccaacctagagtttcagaaaatt |
445 |
Q |
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| T |
27452135 |
ttaatcttcatcccttcccttcatgagcttcaccatccaacctacaatttcagaaaatt |
27452077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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