View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17559_low_5 (Length: 397)
Name: NF17559_low_5
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 1606140 - 1606516
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1606140 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatcaccataac |
1606239 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1606240 |
tcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaa |
1606339 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606340 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
1606439 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatga |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606440 |
ccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatga |
1606516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 1629438 - 1629814
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
1629438 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattac |
1629537 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1629538 |
tcttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaa |
1629637 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
1629638 |
attccagtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaata |
1629737 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatga |
377 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629738 |
ccactgcggcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatga |
1629814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 10821260 - 10820884
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
10821260 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatcaccataac |
10821161 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
10821160 |
tcttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaa |
10821061 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
10821060 |
attccagtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaattttggaata |
10820961 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatga |
377 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10820960 |
ccactgcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatga |
10820884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 1623262 - 1623638
Alignment:
| Q |
1 |
ctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1623262 |
ctccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataac |
1623361 |
T |
|
| Q |
101 |
tctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaa |
200 |
Q |
| |
|
||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1623362 |
tcttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaa |
1623461 |
T |
|
| Q |
201 |
attccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
1623462 |
attccagtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaata |
1623561 |
T |
|
| Q |
301 |
ccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatga |
377 |
Q |
| |
|
| ||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
1623562 |
ctactgcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatga |
1623638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 2576132 - 2576071
Alignment:
| Q |
282 |
atgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagat |
343 |
Q |
| |
|
|||||||||||||||||||| || || || ||||| || |||||||| |||||||||||||| |
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|
| T |
2576132 |
atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat |
2576071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 376
Target Start/End: Original strand, 18780958 - 18781331
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18780958 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactc |
18781057 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18781058 |
ttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaat |
18781157 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaacc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
18781158 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaacact |
18781257 |
T |
|
| Q |
303 |
actgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatg |
376 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
18781258 |
actgcggcgttgccaaagataaagtcgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatg |
18781331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 12802541 - 12802894
Alignment:
| Q |
20 |
ttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactctcgaatattgttgccaa |
119 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| | || || || ||| | |||||||| | |||||| |||| |||||| || ||| |||||| |
|
|
| T |
12802541 |
ttgagcaaaattagtacctccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccag |
12802640 |
T |
|
| Q |
120 |
ggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatg |
219 |
Q |
| |
|
|||| ||||||||||| ||| | || | ||||| ||||| | ||| | || |||||||| ||| | ||||| | ||||||||||||||||| |||| |
|
|
| T |
12802641 |
ggccggcccaagaaggtgttgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatg |
12802740 |
T |
|
| Q |
220 |
ggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaa |
319 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| ||||| || | |||||| |||| | | ||| | || ||||||||||| || || || |||||||| |
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|
| T |
12802741 |
ggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacggctgcgttgccaaa |
12802840 |
T |
|
| Q |
320 |
gatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgc |
373 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| || ||||||||||||||||| |
|
|
| T |
12802841 |
gatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgc |
12802894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 8767130 - 8767056
Alignment:
| Q |
270 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatg |
8767056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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