View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17559_low_6 (Length: 370)

Name: NF17559_low_6
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17559_low_6
NF17559_low_6
[»] chr4 (3 HSPs)
chr4 (15-352)||(2061150-2061487)
chr4 (259-339)||(33349891-33349971)
chr4 (254-349)||(5628866-5628961)
[»] chr1 (1 HSPs)
chr1 (221-344)||(15547025-15547148)
[»] chr7 (5 HSPs)
chr7 (259-349)||(24394479-24394569)
chr7 (288-349)||(22807865-22807926)
chr7 (218-301)||(23568248-23568331)
chr7 (254-344)||(47272497-47272586)
chr7 (260-336)||(47202270-47202346)
[»] chr3 (4 HSPs)
chr3 (282-340)||(4302730-4302788)
chr3 (254-341)||(9247685-9247773)
chr3 (218-349)||(17073374-17073505)
chr3 (218-337)||(22137796-22137915)
[»] scaffold0034 (1 HSPs)
scaffold0034 (258-322)||(24206-24270)
[»] chr2 (1 HSPs)
chr2 (258-349)||(44666893-44666986)
[»] chr6 (1 HSPs)
chr6 (312-349)||(6731770-6731807)
[»] chr5 (1 HSPs)
chr5 (287-347)||(38508415-38508475)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 2061487 - 2061150
Alignment:
Q  15 gatctgactgtttaataaaatttgttgttnnnnnnnncattaaataattaattgatgagggcataaatcaatcaaacttgaccggtactgnnnnnnnnnn 114  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||              
T  2061487 gatctgactgtttaataaaatttgttgtaaaaaaaaacattaaataattaattgatgagggcataaatcaatcaaacttgatcggtactgttttttggtt 2061388  T
Q  115 nnnnnnnngaggaattgagagttaccattgcgttcacttttatatatatgggataaatatagttgaacacacaaccattcaaaatagacttataaatagg 214  Q
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2061387 tttgttttgaggaattgagagttaccattgcgttcacttttttatatatgggataaatataattgaacacacaaccattcaaaatagacttataaatagg 2061288  T
Q  215 agcgggaacaagtcagaccgtccgacgtgggcctatggtctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactt 314  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  2061287 agcgggaacaagtcataccgtccgacatgggcctatggtctaacctatttaaagtctagttcgacctaactcgtttaatataaaggtgaagctcaaactt 2061188  T
Q  315 tttataaagcatgtttaattaaataggtcagactattt 352  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2061187 tttataaagcatgtttaattaaataggtcagactattt 2061150  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 33349971 - 33349891
Alignment:
Q  259 ctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaata 339  Q
    |||||||||||||| |||  || ||||| ||||||| |||||||| |||||| ||| ||||||||| | ||||||||||||    
T  33349971 ctatttaaagtctaattcagcccaacttatttaataaaaaggtcaggctcaagcttcttataaagcttatttaattaaata 33349891  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 5628866 - 5628961
Alignment:
Q  254 ctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaataggtcagacta 349  Q
    |||||||||||||||  ||| ||| ||||  |  ||||||| ||| |||||| |||| ||||||||||||  ||||||||||||||||| ||||||    
T  5628866 ctaacctatttaaagcttagctcgccctagttcctttaataaaaaagtcaagttcaagctttttataaagtttgtttaattaaataggttagacta 5628961  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 344
Target Start/End: Complemental strand, 15547148 - 15547025
Alignment:
Q  221 aacaagtcagaccgtccgacgtgggcctatggtctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttata 320  Q
    |||| ||| |||| |||||| ||| |||| | ||||||||||||||||| ||  | |||| |  |||||||||| ||| ||||| || ||||||||||||    
T  15547148 aacatgtctgaccatccgacatggacctacgatctaacctatttaaagtttaacttgacccagtttgtttaataaaaatgtcaaacttaaactttttata 15547049  T
Q  321 aagcatgtttaattaaataggtca 344  Q
    |||| | |||| ||| ||||||||    
T  15547048 aagcctatttacttagataggtca 15547025  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 349
Target Start/End: Complemental strand, 24394569 - 24394479
Alignment:
Q  259 ctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaataggtcagacta 349  Q
    |||||||||| |||  |||| | |||| |||||||| |||||| |||||||| |||||||||||   | |||||||||||||| |||||||    
T  24394569 ctatttaaagcctaactcgatcaaactcgtttaataaaaaggtaaagctcaagctttttataaaatctatttaattaaataggccagacta 24394479  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 22807926 - 22807865
Alignment:
Q  288 tttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaataggtcagacta 349  Q
    |||||| ||||||||| |||||| ||||| |||||||   ||||||||||||||||||||||    
T  22807926 tttaatgtaaaggtcaggctcaagcttttaataaagctcatttaattaaataggtcagacta 22807865  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 23568248 - 23568331
Alignment:
Q  218 gggaacaagtcagaccgtccgacgtgggcctatggtctaacctatttaaagtctagttcgacctaacttgtttaatataaaggt 301  Q
    ||||||| | ||||||| |||||  |||||||||| ||| ||||||||||| ||| ||||||| | || |||||||| ||||||    
T  23568248 gggaacaggccagaccggccgacaggggcctatggcctagcctatttaaagcctatttcgacccagctcgtttaataaaaaggt 23568331  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 47272497 - 47272586
Alignment:
Q  254 ctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaataggtca 344  Q
    ||||| |||||||||| | |||||  |||||| |||||||| |||  |||| ||||||| ||||||||||  | |||||||||||||||||    
T  47272497 ctaacatatttaaagtatggttcggtctaactcgtttaataaaaat-tcaaactcaaacattttataaagtctatttaattaaataggtca 47272586  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 47202270 - 47202346
Alignment:
Q  260 tatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaa 336  Q
    |||||||||||||||||| || | ||||||||||| || |||||  || || ||||||||||||  | |||||||||    
T  47202270 tatttaaagtctagttcggcccagcttgtttaataaaagggtcagacttaagctttttataaagtctatttaattaa 47202346  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 4302788 - 4302730
Alignment:
Q  282 aacttgtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaatag 340  Q
    |||||||||||||  ||||| | |||||| || ||||||||||||||||||||||||||    
T  4302788 aacttgtttaataagaaggttaggctcaagctctttataaagcatgtttaattaaatag 4302730  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 9247773 - 9247685
Alignment:
Q  254 ctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaact-ttttataaagcatgtttaattaaatagg 341  Q
    |||||||||||| ||||||  | |||| | || |||||||| |||||||| ||||||||| ||||||||||| | |||| |||||||||    
T  9247773 ctaacctatttagagtctaacttgacccagctcgtttaataaaaaggtcaggctcaaacttttttataaagcctatttacttaaatagg 9247685  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 17073374 - 17073505
Alignment:
Q  218 gggaacaagtcagaccgtccgacgtgggcctatggtctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaacttttt 317  Q
    ||||||| || ||| ||||||||  |||| || || |||  |||| ||||||||||||   || |||| ||||| || |||||||| | |||| ||||||    
T  17073374 gggaacaggtgagaacgtccgacaagggcatacggcctagtctatataaagtctagttttgcccaactcgtttattaaaaaggtcaggttcaagcttttt 17073473  T
Q  318 ataaagcatgtttaattaaataggtcagacta 349  Q
    ||||| ||| |||||||||||| || ||||||    
T  17073474 ataaaacatatttaattaaataagtaagacta 17073505  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 22137796 - 22137915
Alignment:
Q  218 gggaacaagtcagaccgtccgacgtgggcctatggtctaacctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaacttttt 317  Q
    ||||||||| |||| ||| ||||  ||| | |||| ||| ||||||||||| |||| ||| || | || ||||| ||  ||||||| |||||| ||||||    
T  22137796 gggaacaagccagaacgttcgacaggggtccatggcctagcctatttaaagcctagctcggccgagctcgtttattaacaaggtcaggctcaagcttttt 22137895  T
Q  318 ataaagcatgtttaattaaa 337  Q
    |||| || ||||||||||||    
T  22137896 ataaggcctgtttaattaaa 22137915  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 24206 - 24270
Alignment:
Q  258 cctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaa 322  Q
    |||||||||||||||| | | || | ||||||||||| |||||||| |||||| |||||||||||    
T  24206 cctatttaaagtctagcttggcccagcttgtttaataaaaaggtcaggctcaagctttttataaa 24270  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 349
Target Start/End: Complemental strand, 44666986 - 44666893
Alignment:
Q  258 cctatttaaagtctagttcgacctaacttgtttaatataaaggtcaagctcaaactttttataaagca--tgtttaattaaataggtcagacta 349  Q
    |||||||||||||||  ||||||||  | |||||||| ||||||||  | |||  |||||||||||||  |||||| |||||||| ||||||||    
T  44666986 cctatttaaagtctacctcgacctagttcgtttaataaaaaggtcatacacaagttttttataaagcatgtgtttagttaaatagatcagacta 44666893  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 6731807 - 6731770
Alignment:
Q  312 ctttttataaagcatgtttaattaaataggtcagacta 349  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  6731807 ctttttataaagcatgtttaattaagtaggccagacta 6731770  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 38508415 - 38508475
Alignment:
Q  287 gtttaatataaaggtcaagctcaaactttttataaagcatgtttaattaaataggtcagac 347  Q
    |||||||| | ||||| |||||||  || ||||||||| | ||||||||||||||||||||    
T  38508415 gtttaataaataggtcgagctcaagtttgttataaagcttatttaattaaataggtcagac 38508475  T

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