View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_low_7 (Length: 358)
Name: NF17559_low_7
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 3658602 - 3658942
Alignment:
| Q |
1 |
agaagggtagaatcatcagacataaaaaacctagtttatttgcaagcaattgtgaaagaaactttaaggttataccctccaggtccactattagtacccc |
100 |
Q |
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| T |
3658602 |
agaagggtagaatcatcagacataaaaaacctagtttatttgcaagcaattgtgaaagaaactttaaggttataccctccaggtccactattagtacccc |
3658701 |
T |
|
| Q |
101 |
atgaagcaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacatagagatccaagtatttg |
200 |
Q |
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| T |
3658702 |
atgaagtaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacatagagatccaagtatttg |
3658801 |
T |
|
| Q |
201 |
gttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtaccttccttttggattaggg |
300 |
Q |
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| T |
3658802 |
gttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtaccttccttttggattaggg |
3658901 |
T |
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| Q |
301 |
agaagagcttgtcctggatcgttgtttgctacacaagttat |
341 |
Q |
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| T |
3658902 |
agaagagcttgtcctggatcgttgtttgctacacaagttat |
3658942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 7842856 - 7843191
Alignment:
| Q |
1 |
agaagggtagaatcatcagacataaaaaacctagtttatttgcaagcaattgtgaaagaaactttaaggttataccctccaggtccactattagtacccc |
100 |
Q |
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| T |
7842856 |
agaagggtagaatcgtcggacataaaaaacttggtttatttgcaagcaattttaaaagaaactttgaggttatacccagcagctccactactagcacccc |
7842955 |
T |
|
| Q |
101 |
atgaagcaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacatagagatccaagtatttg |
200 |
Q |
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| T |
7842956 |
atgaagccacagaagattgtaacattcaaggctattatgtaccaaaaggaacacgtgtatttttcaatgtatggaaattacatagagatccaagtatttg |
7843055 |
T |
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| Q |
201 |
gttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtaccttccttttggattaggg |
300 |
Q |
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| T |
7843056 |
gtcagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcatcattttgagtaccttccttttggattaggg |
7843155 |
T |
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| Q |
301 |
agaagagcttgtcctggatcgttgtttgctacacaa |
336 |
Q |
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| T |
7843156 |
agaagagcttgtcctggatctttgtttgctacacaa |
7843191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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