View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17559_low_8 (Length: 330)
Name: NF17559_low_8
Description: NF17559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17559_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 34697556 - 34697846
Alignment:
| Q |
20 |
cgataaaattacattgacatcgtgattttgtgaagctcgaaagtgtatagcttttgctaagatcatagtgtctcattgtgatatgtcaatctaaacttgt |
119 |
Q |
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| T |
34697556 |
cgataaaattacattggcatcgtgattttgtgaagctcgaaagtgtatagcttttgctaagatcatagtgtctcattgtgatatgtcaatctaaacttg- |
34697654 |
T |
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| Q |
120 |
actactttgtgtgtgttttatacaatatgtaccatgacctttaaagtgtacaatatcttatctcaattttattgcaaccaaaccatccccaccgttgtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
34697655 |
--tactttgtgtgtgttttatacaatatgtaccaagacctctaaagtgtacaatatcttatctcaa-tttattgc-----aaccatccccaccgttgtaa |
34697746 |
T |
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| Q |
220 |
attctagcatcattctctaggagcagcatttagtgatatcatttgtaaccttttattt---atgacaaagattactactcaagtcaaatgaccatgaagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
34697747 |
attctagcatcattctctaggagcagcatttagtgatatcatttgtaaccttttatttatgatgacaaagactactactcaagtcaaatgaccatgaagt |
34697846 |
T |
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