View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755R-Insertion-1 (Length: 1065)
Name: NF1755R-Insertion-1
Description: NF1755R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 31 - 634
Target Start/End: Original strand, 39560985 - 39561583
Alignment:
| Q |
31 |
acccttatgttaactcctccaaataaattatactagattttaacccgcgcacggggatgttttgtattttgttttaaagaaaataatgaggatgtttctc |
130 |
Q |
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| T |
39560985 |
acccttatgttaactcctccaaataaattatactagattttaacccgcgcacggggatgttttgtattttgttttaaagaaaattatgaggatgtttctc |
39561084 |
T |
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| Q |
131 |
ttcaattnnnnnnnttatggtgcatgtgaaatttgtttgtgatattcaaaatatgtattactacttgtgtaatctttaagagatcgttgtgtttcatgaa |
230 |
Q |
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| T |
39561085 |
ttcaattaaaaaaattatggtgcatgtgaaatttgtttgtgatattcaaaatatgtattactacttgtgtaatctttaagagatcgat-----tcatgaa |
39561179 |
T |
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| Q |
231 |
taactatgatattatccatacttttattaattatgaataacgattgaaaaagtgaaattggacactatatttttaccttaaattttaaaaatattgagtt |
330 |
Q |
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| T |
39561180 |
taactatgatattatccatacttttattaattatgaataacgattgaaaaagtgaaattagacactatatttttaccttaaattttaaaaatattaagtt |
39561279 |
T |
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| Q |
331 |
tataagtcatctcacttgtatgatgtttaacctcaactctttaatttaacgtggaattttaattcgcactttacattttaaaacatattggttgttaatc |
430 |
Q |
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| T |
39561280 |
tataagtcatctcacttatatgatgtttaacctcaactctttaatttaacgtggaattttaattcacacattacattttaaaacatattggttgttaatc |
39561379 |
T |
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| Q |
431 |
aatatatataacacatcttaggcagaaaatatgattgacattcagttaatggacaggctaattatcactctattgtgagagagtaaaatgaattagtagc |
530 |
Q |
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| T |
39561380 |
aatatatataacacatcttaggcagaaaatatgattaacattcagttaatggacaggctaattatcactctattatgagagagtaaaatgaattagtagc |
39561479 |
T |
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| Q |
531 |
accctaactaataacgataaatgccaacaaaaataaattcattctatatttgataaaggcaaaaataaagaatcaatcataataagtagggtacatatca |
630 |
Q |
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| T |
39561480 |
accctaactaataacgataaatgccaacaaaaataaattaattctatatttgataaagacaaaaataaagaatcaatcataataagtagggtacatatca |
39561579 |
T |
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