View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755_high_1 (Length: 703)

Name: NF1755_high_1
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755_high_1
NF1755_high_1
[»] chr5 (13 HSPs)
chr5 (16-696)||(7736845-7737525)
chr5 (18-193)||(7748274-7748449)
chr5 (54-97)||(7768296-7768339)
chr5 (156-309)||(7768105-7768255)
chr5 (584-682)||(12081896-12081994)
chr5 (563-682)||(5731919-5732039)
chr5 (622-674)||(21149730-21149782)
chr5 (563-682)||(42086315-42086435)
chr5 (606-693)||(24875322-24875409)
chr5 (615-686)||(41163512-41163582)
chr5 (563-671)||(9805003-9805112)
chr5 (625-682)||(23383645-23383702)
chr5 (622-682)||(7866569-7866629)
[»] chr4 (11 HSPs)
chr4 (565-690)||(295534-295659)
chr4 (563-676)||(4736595-4736708)
chr4 (590-663)||(14859302-14859375)
chr4 (563-674)||(14124016-14124128)
chr4 (622-682)||(53599052-53599112)
chr4 (622-682)||(5472907-5472967)
chr4 (565-682)||(21429293-21429411)
chr4 (562-682)||(29895779-29895900)
chr4 (622-682)||(1446818-1446878)
chr4 (622-682)||(20128301-20128361)
chr4 (563-682)||(38166019-38166139)
[»] chr6 (9 HSPs)
chr6 (622-686)||(12606417-12606481)
chr6 (563-682)||(3601075-3601195)
chr6 (622-682)||(21898639-21898699)
chr6 (615-686)||(10311521-10311592)
chr6 (622-675)||(13584509-13584562)
chr6 (627-672)||(34954683-34954728)
chr6 (563-682)||(19089489-19089609)
chr6 (622-675)||(32048449-32048502)
chr6 (563-682)||(6606096-6606216)
[»] chr7 (13 HSPs)
chr7 (622-690)||(23823931-23823999)
chr7 (573-682)||(42210272-42210381)
chr7 (606-682)||(1797450-1797526)
chr7 (573-682)||(17748392-17748501)
chr7 (626-682)||(16802113-16802169)
chr7 (622-674)||(29151938-29151990)
chr7 (622-682)||(43862031-43862091)
chr7 (622-682)||(4228813-4228870)
chr7 (622-683)||(365129-365190)
chr7 (622-687)||(46414660-46414725)
chr7 (563-682)||(10047875-10047995)
chr7 (584-672)||(22973967-22974055)
chr7 (563-682)||(48804673-48804793)
[»] chr2 (18 HSPs)
chr2 (573-691)||(11069856-11069974)
chr2 (622-682)||(37560160-37560220)
chr2 (622-682)||(38962750-38962810)
chr2 (626-680)||(14853430-14853484)
chr2 (622-691)||(6358210-6358279)
chr2 (622-682)||(7747261-7747321)
chr2 (622-670)||(10026675-10026723)
chr2 (622-682)||(41220622-41220682)
chr2 (622-682)||(42770710-42770770)
chr2 (615-682)||(19976859-19976926)
chr2 (622-672)||(18649085-18649135)
chr2 (584-682)||(39806906-39807004)
chr2 (573-682)||(331488-331597)
chr2 (563-691)||(25540403-25540532)
chr2 (622-675)||(39201567-39201620)
chr2 (622-682)||(10823047-10823107)
chr2 (622-682)||(16034924-16034984)
chr2 (622-682)||(41187836-41187896)
[»] chr3 (9 HSPs)
chr3 (573-682)||(29135900-29136009)
chr3 (626-690)||(41219572-41219635)
chr3 (615-682)||(3755557-3755624)
chr3 (584-672)||(928597-928685)
chr3 (622-682)||(51683014-51683074)
chr3 (573-690)||(10040536-10040652)
chr3 (622-671)||(35923683-35923732)
chr3 (622-682)||(6462399-6462459)
chr3 (622-690)||(49082803-49082871)
[»] chr8 (4 HSPs)
chr8 (622-682)||(6100463-6100523)
chr8 (622-679)||(18374004-18374061)
chr8 (629-661)||(68164-68196)
chr8 (622-682)||(10927597-10927657)
[»] chr1 (15 HSPs)
chr1 (615-682)||(45726486-45726553)
chr1 (622-684)||(44969651-44969712)
chr1 (622-672)||(45361942-45361992)
chr1 (622-682)||(5855510-5855570)
chr1 (622-682)||(16263533-16263593)
chr1 (600-676)||(31734283-31734358)
chr1 (615-682)||(12744576-12744643)
chr1 (615-682)||(12755566-12755633)
chr1 (622-691)||(13265917-13265986)
chr1 (622-691)||(34334355-34334424)
chr1 (573-645)||(2567301-2567373)
chr1 (563-646)||(8764015-8764099)
chr1 (622-670)||(33498899-33498947)
chr1 (622-690)||(41663916-41663984)
chr1 (622-690)||(49078094-49078162)
[»] scaffold0170 (1 HSPs)
scaffold0170 (584-680)||(9837-9933)
[»] scaffold0016 (1 HSPs)
scaffold0016 (625-682)||(8763-8820)


Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 16 - 696
Target Start/End: Complemental strand, 7737525 - 7736845
Alignment:
Q  16 attttttggctaaagggttgatttggtactgccaagtagcaagtccatcaccgcagaagccgtggaggagaaccactactggtttcgtgggtttggatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  7737525 attttttggctaaagggttgatttggtactgccaagtagcaagtccatcaccgcagaagccatggaggagaaccactactggcttcgtgggtttggatat 7737426  T
Q  116 gggtttgggttttagtttggacttggaaatggtgttagaaggaacccaaaatctcataactgttcctggttctatctctactgtgtggagctttaaacct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737425 gggtttgggttttagtttggacttggaaatggtgttagaaggaacccaaaatctcataactgttcctggttctatctctactgtgtggagctttaaacct 7737326  T
Q  216 gccatcttcactacccaactaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcactggcttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737325 gccatcttcactacccaactaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcactggcttt 7737226  T
Q  316 ctcttttgtactaatgttttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaa 415  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737225 ctcttttgtattaatgttttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaa 7737126  T
Q  416 cacatttgagtaaatggaatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatataatatcccacttgaaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737125 cacatttgagtaaatggaatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatataatatcccacttgaaa 7737026  T
Q  516 tggttagaaaacccatacttccaatgattcaaattgnnnnnnnnnncctttcgcacc-gtttccaaccaaccaacggtggatggctaatttggctcgtaa 614  Q
    |||||||||||||||||||||||||||||| ||||            |||||||||| |||||||| ||||||||||| || ||||||| || || ||||    
T  7737025 tggttagaaaacccatacttccaatgattc-aatttttttattttttctttcgcaccggtttccaatcaaccaacggtcgacggctaatctgacttgtaa 7736927  T
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaataatct 696  Q
    ||||| | ||| |||||| |||||||||||| |||||||||||||||   | |||||||||| ||||| |||||||| ||||    
T  7736926 gtagagatatgtgcactgaccaaacgttgtttgtcctgagaatcgaactcgatattcctcgggtacgtccttagaatgatct 7736845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 7748449 - 7748274
Alignment:
Q  18 tttttggctaaagggttgatttggtactgccaagtagcaagtccatcaccgcagaagccgtggaggagaaccactactggtttcgtgggtttggatatgg 117  Q
    ||||| ||||||| |||||||||| ||  ||||||| ||||||| || ||   ||||||||| || |||||||||||||| || || ||||| || |||     
T  7748449 tttttagctaaagtgttgatttggaacccccaagtaacaagtccgtccccagcgaagccgtgaagaagaaccactactggcttggtaggttttgaaatgt 7748350  T
Q  118 gtttgggttttagtttggacttggaaatggtgttagaaggaacccaaaatctcataactgttcctggttctatctc 193  Q
    | ||| ||||  |||||| | | |||||||| | ||| |||||||||||| |||||||||| || || ||||||||    
T  7748349 gcttgagtttgggtttgggcgttgaaatggtttcagatggaacccaaaatttcataactgtaccgggctctatctc 7748274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 7768339 - 7768296
Alignment:
Q  54 gcaagtccatcaccgcagaagccgtggaggagaaccactactgg 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  7768339 gcaagtccatcgccgcagaagccgtggaggagaaccactactgg 7768296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 309
Target Start/End: Complemental strand, 7768255 - 7768105
Alignment:
Q  156 ggaacccaaaatctcataactgttcctggttctatctctactgtgtggagctttaaacctgccatcttcactacccaactaaccaatgtccaaattacgt 255  Q
    |||||||| |||||||||  ||| ||| | ||||||||||| ||||  ||||| | |||| |  ||||||    ||||||| | |||| |||||||||||    
T  7768255 ggaacccagaatctcatacgtgtaccttgctctatctctacggtgtaaagcttcacacctacattcttcatcgtccaactaccaaatgaccaaattacgt 7768156  T
Q  256 tcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcact 309  Q
    ||||| |||||||||||||| |||| |||||||  | |||||||||||||||||    
T  7768155 tcaccatgttcaccatgtttaatta-atttgtt--tttctattgtgattgcact 7768105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 682
Target Start/End: Complemental strand, 12081994 - 12081896
Alignment:
Q  584 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| |||||| | |||||| |||||||  |||||  |||||||||||||||| ||||||||  ||||||||||||| |  ||||||| |||||||||    
T  12081994 accaaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgttgttccccctgagaatcgaacccagtattccccggatacgt 12081896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 682
Target Start/End: Original strand, 5731919 - 5732039
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| || || |||| | | ||||| |||||| || |||||  |||||||||||||||| |||||||| ||||| ||||||||    
T  5731919 ctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5732018  T
Q  662 tctggtattcctcggatacgt 682  Q
     | |||||||| ||| |||||    
T  5732019 cccggtattccccgggtacgt 5732039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 674
Target Start/End: Complemental strand, 21149782 - 21149730
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctc 674  Q
    |||||||||||| ||||||||||||  ||||| ||||||| ||||||||||||    
T  21149782 catgcgcactggtcaaacgttgttccccctgaaaatcgaacctggtattcctc 21149730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 42086435 - 42086315
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  ||||| |  |||||  |||||||||||| ||| ||||||||  |||| ||||||||    
T  42086435 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaa 42086336  T
Q  662 tctggtattcctcggatacgt 682  Q
     | |||||||||||| |||||    
T  42086335 cccggtattcctcgggtacgt 42086315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 693
Target Start/End: Complemental strand, 24875409 - 24875322
Alignment:
Q  606 ggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaataa 693  Q
    |||||||  ||||| ||||||||||||| ||||||||||||  ||| ||||||||| ||| ||||| | || ||||| ||| ||||||    
T  24875409 ggctcgtgcgtagagacatgcgcactggtcaaacgttgttctccctaagaatcgaacctgatattctttgggtacgtccttggaataa 24875322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 686
Target Start/End: Original strand, 41163512 - 41163582
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctt 686  Q
    ||||| ||||| ||||||||||||||||||||  |||| |||||||| | |||||||| ||| |||||||||    
T  41163512 gtagagacatgtgcactggccaaacgttgttc-ccctgggaatcgaacccggtattccccgggtacgttctt 41163582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 671
Target Start/End: Complemental strand, 9805112 - 9805003
Alignment:
Q  563 ctttcgcacc-gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    |||||||||| |||||| ||| ||||| |||||| | |||||  ||||| |  |||||  |||||||||||||||| ||||||||  |||| ||||||||    
T  9805112 ctttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 9805013  T
Q  662 tctggtattc 671  Q
     | |||||||    
T  9805012 cccggtattc 9805003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 682
Target Start/End: Complemental strand, 23383702 - 23383645
Alignment:
Q  625 gcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||||||||||| ||||||||  |||| |||||||| | |||||||||| |||||||    
T  23383702 gcgcactggccaagcgttgttccccctgggaatcgaacccggtattcctctgatacgt 23383645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 7866629 - 7866569
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| |||||||||| |||||||| ||||  |||||||| | |||||||||||| |||||    
T  7866629 catgcacactggccaagcgttgttcctcctcggaatcgaacccggtattcctcgggtacgt 7866569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 565 - 690
Target Start/End: Original strand, 295534 - 295659
Alignment:
Q  565 ttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatc 663  Q
    ||||||||| |||| |||| |||||||||||| | ||||| ||| ||||  |||||  ||||||||||||||||||||||||| | ||| ||||||||||    
T  295534 ttcgcaccggtttcaaacccaccaacggtggacgactaatctggttcgtgcgtagaggcatgcgcactggccaaacgttgttcct-ctgggaatcgaatc 295632  T
Q  664 tggtattcctcggatacgttcttagaa 690  Q
    ||||||||| ||||||||| |||||||    
T  295633 tggtattccccggatacgtccttagaa 295659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 676
Target Start/End: Complemental strand, 4736708 - 4736595
Alignment:
Q  563 ctttcgcaccgtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaat 662  Q
    |||||||||||||||| ||| |||||||||||  | |||||| |||| ||| |||||  ||||| || |||||||||||||||    |||||||| |||     
T  4736708 ctttcgcaccgtttccgacccaccaacggtgggcgactaattcggcttgtacgtagaggcatgcacattggccaaacgttgtttccactgagaattgaac 4736609  T
Q  663 ctggtattcctcgg 676  Q
    | ||||||||||||    
T  4736608 ccggtattcctcgg 4736595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 590 - 663
Target Start/End: Complemental strand, 14859375 - 14859302
Alignment:
Q  590 ggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatc 663  Q
    |||||||| ||||| ||||||||  ||||| ||||||||||||| ||||| |||||| |||||| |||||||||    
T  14859375 ggtggatgactaatctggctcgtgcgtagagacatgcgcactggtcaaacattgttcctcctgaaaatcgaatc 14859302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 674
Target Start/End: Complemental strand, 14124128 - 14124016
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||||||| ||||| ||||   | |||||  |||||||  |||||  ||||||||||||||||| |||||||  |||| ||||||||    
T  14124128 ctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagaggcatgcgcactggccaaatgttgttccccctgggaatcgaa 14124029  T
Q  662 tctggtattcctc 674  Q
     ||||||||||||    
T  14124028 cctggtattcctc 14124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 53599112 - 53599052
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||||||||||||||||||||||| ||||| |||||||| | |||||||| ||| |||||    
T  53599112 catgcgcactggccaaacgttgttcctcctgggaatcgaacccggtattccccgggtacgt 53599052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 5472907 - 5472967
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||   |||||||||| || |||||||||| |||||||||    
T  5472907 catgcgcactggccaagcgttgtttcccctgagaatcaaacctggtattccccggatacgt 5472967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 682
Target Start/End: Complemental strand, 21429411 - 21429293
Alignment:
Q  565 ttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatc 663  Q
    ||||||||| ||||| ||| ||||| |||||| | ||| | || |||||  |||||  ||||||||||||| |||||||||||  ||| | ||||||| |    
T  21429411 ttcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaacc 21429312  T
Q  664 tggtattcctcggatacgt 682  Q
     | ||||||||||||||||    
T  21429311 cgatattcctcggatacgt 21429293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 682
Target Start/End: Complemental strand, 29895900 - 29895779
Alignment:
Q  562 cctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcga 660  Q
    |||||||||||| ||||| | | ||||| |||||| | |||||  ||||| |  |||||  ||||||||||||||||  |||||||  |||| |||||||    
T  29895900 cctttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcga 29895801  T
Q  661 atctggtattcctcggatacgt 682  Q
    | | |||||||| |||||||||    
T  29895800 acccggtattccccggatacgt 29895779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 1446878 - 1446818
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||||||||||||||  |||||||  |||| |||||||| | |||||||| |||||||||    
T  1446878 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgt 1446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 20128361 - 20128301
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| | ||||||  ||||||||||||| |  ||||||| |||||||||    
T  20128361 catgcgcactggccaagcattgttccccctgagaatcgaacccagtattccccggatacgt 20128301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 38166139 - 38166019
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||  | |||||  |||||||  |||||  |||||||||||||||| ||||||||  |||| ||||| ||    
T  38166139 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatccaa 38166040  T
Q  662 tctggtattcctcggatacgt 682  Q
     |  ||||||| |||||||||    
T  38166039 cccagtattccccggatacgt 38166019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 622 - 686
Target Start/End: Complemental strand, 12606481 - 12606417
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctt 686  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||||| |||||||||||||    
T  12606481 catgcgcactggccaaacgttgttccccctggaaatcgaatctggtattccccggatacgttctt 12606417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 3601195 - 3601075
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  |||||||  ||| |  |||||||||||||||| ||||||||  |||||||||||||    
T  3601195 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcgaa 3601096  T
Q  662 tctggtattcctcggatacgt 682  Q
     | |||||||| || ||||||    
T  3601095 accggtattccccgaatacgt 3601075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 21898699 - 21898639
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| |||||||||    
T  21898699 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgt 21898639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 686
Target Start/End: Original strand, 10311521 - 10311592
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctt 686  Q
    ||||| ||||||||||||||||| ||||||||  | |||| |||||| | |||||||| |||||||||||||    
T  10311521 gtagagacatgcgcactggccaagcgttgttccccttgaggatcgaacccggtattccccggatacgttctt 10311592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 675
Target Start/End: Original strand, 13584509 - 13584562
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcg 675  Q
    ||||||||||||||||||||||||| || |  |||||||| |||||||||||||    
T  13584509 catgcgcactggccaaacgttgttcatcttaggaatcgaacctggtattcctcg 13584562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 34954683 - 34954728
Alignment:
Q  627 gcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||    
T  34954683 gcactggccaaacgttgttccccctgagaatcgaacctggtattcc 34954728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 19089609 - 19089489
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| ||| || | |||||  |||||||  |||||  ||||| ||||||||||  |||||||  |||| ||||| ||    
T  19089609 ctttcgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaagtgttgttccccctgggaatcaaa 19089510  T
Q  662 tctggtattcctcggatacgt 682  Q
     ||||||||||||||||||||    
T  19089509 cctggtattcctcggatacgt 19089489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 675
Target Start/End: Complemental strand, 32048502 - 32048449
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcg 675  Q
    ||||| ||||| |||||||||||||  ||||| ||||||||||| |||||||||    
T  32048502 catgcacactgaccaaacgttgttctccctgaaaatcgaatctgatattcctcg 32048449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 682
Target Start/End: Original strand, 6606096 - 6606216
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  ||||| |  |||||  ||||  ||||||||||  |||||||  |||||||||||||    
T  6606096 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaagtgttgttccccctgagaatcgaa 6606195  T
Q  662 tctggtattcctcggatacgt 682  Q
     | |||||||| |||||||||    
T  6606196 cccggtattccccggatacgt 6606216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 622 - 690
Target Start/End: Complemental strand, 23823999 - 23823931
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 690  Q
    ||||||||||||||||||||||||   | |||||||| |||||| |||||||||||||||| |||||||    
T  23823999 catgcgcactggccaaacgttgtttcccttgagaatcaaatctgatattcctcggatacgtccttagaa 23823931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 573 - 682
Target Start/End: Original strand, 42210272 - 42210381
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||| ||| ||||||||||| ||  ||||  |||||||  |||||  ||||||||||||||||||||||||    ||| |||||||| | ||||||||    
T  42210272 gtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttttcactgggaatcgaagccggtattcc 42210371  T
Q  673 tcggatacgt 682  Q
    ||||||||||    
T  42210372 tcggatacgt 42210381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 682
Target Start/End: Complemental strand, 1797526 - 1797450
Alignment:
Q  606 ggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||  ||||| ||||||||||||||||| |||||||   |||| |||||||| | ||||||||||||||||||    
T  1797526 ggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcgaacccggtattcctcggatacgt 1797450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 682
Target Start/End: Original strand, 17748392 - 17748501
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||| ||| | ||| |||||| | |||||  |||||||| |||||  |||||||||||||||| ||||||||  |||| |||||||| | ||||||||    
T  17748392 gtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattcc 17748491  T
Q  673 tcggatacgt 682  Q
     || ||||||    
T  17748492 ccgaatacgt 17748501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 682
Target Start/End: Complemental strand, 16802169 - 16802113
Alignment:
Q  626 cgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||| |||||||| |||| ||||||||||| |||||||| ||| |||||    
T  16802169 cgcactggccaatcgttgttcctcctaagaatcgaatccggtattccccgggtacgt 16802113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 674
Target Start/End: Complemental strand, 29151990 - 29151938
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctc 674  Q
    |||||||||||| |||||||||||| ||||| |||||||| | ||||||||||    
T  29151990 catgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtattcctc 29151938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 43862031 - 43862091
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||||||||||||  |||| |||||||| | |||||||| | |||||||    
T  43862031 catgcgcactggccaaacgttgttccccctgggaatcgaacccggtattccccagatacgt 43862091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 4228813 - 4228870
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||| ||||||||||||||||||||   |||  ||||||| ||||||||||||||||||||    
T  4228813 catgtgcactggccaaacgttgttc---ctggaaatcgaacctggtattcctcggatacgt 4228870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 683
Target Start/End: Complemental strand, 365190 - 365129
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtt 683  Q
    |||||||||||   || |||||||| ||||| |||||||| | |||||||||||||||||||    
T  365190 catgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcggatacgtt 365129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 687
Target Start/End: Complemental strand, 46414725 - 46414660
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctta 687  Q
    |||||||| ||||||| |||| ||| ||||||||||||||  ||||||||| ||| ||||| ||||    
T  46414725 catgcgcattggccaagcgttattcatcctgagaatcgaacttggtattccacgggtacgtcctta 46414660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 682
Target Start/End: Original strand, 10047875 - 10047995
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||| | ||||||  |||| |  |||||  | ||||||||||||||  |||||||  |||| ||||||||    
T  10047875 ctttcgcaccggtttccgacccaccaatggtggacgactaattctgctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcgaa 10047974  T
Q  662 tctggtattcctcggatacgt 682  Q
     | |||||||| |||||||||    
T  10047975 cccggtattccccggatacgt 10047995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 584 - 672
Target Start/End: Complemental strand, 22974055 - 22973967
Alignment:
Q  584 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    ||||| |||||| | ||||| |||||| |  |||||  ||||| |||||||||| ||||||||  ||||||||||||| | ||||||||    
T  22974055 accaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacccggtattcc 22973967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 48804793 - 48804673
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  ||||| |  |||||  ||||||||||||||||  |||||||  | || ||||||||    
T  48804793 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaa 48804694  T
Q  662 tctggtattcctcggatacgt 682  Q
     | |||||||| |||||||||    
T  48804693 cccggtattccccggatacgt 48804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 691
Target Start/End: Complemental strand, 11069974 - 11069856
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||| ||| |||||||||||| | ||||||  ||||||  |||||   ||||||||||||||||||||||||  |||  |||||||| ||||||||||    
T  11069974 gtttccgacccaccaacggtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgttccccctcggaatcgaacctggtattcc 11069875  T
Q  673 tcggatacgttcttagaat 691  Q
     ||| ||||| ||| ||||    
T  11069874 ccgggtacgtccttggaat 11069856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 37560220 - 37560160
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||||||||| |||||||||||||  | ||||||||||| |||||||||||||| |||||    
T  37560220 catgcgcactgaccaaacgttgttccccttgagaatcgaacctggtattcctcgggtacgt 37560160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 38962810 - 38962750
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| |||||| ||||||| | |||||||| |||||||||    
T  38962810 catgcgcactggccaagcgttgttcctcctgaaaatcgaacccggtattccccggatacgt 38962750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 680
Target Start/End: Original strand, 14853430 - 14853484
Alignment:
Q  626 cgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatac 680  Q
    ||||||||||||| |||||||  ||||| |||||||||||||||||| |||||||    
T  14853430 cgcactggccaaaagttgttccccctgaaaatcgaatctggtattccccggatac 14853484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 691
Target Start/End: Original strand, 6358210 - 6358279
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaat 691  Q
    ||||||||||||||||  |||||||  ||||  |||||||||||||||||| ||||||||| ||| ||||    
T  6358210 catgcgcactggccaagtgttgttccccctggaaatcgaatctggtattccccggatacgtcctttgaat 6358279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 7747321 - 7747261
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| ||||||||||||||||||| ||||  |||||||| | |||||||| |||||||||    
T  7747321 catgcacactggccaaacgttgttcctcctaggaatcgaacccggtattccccggatacgt 7747261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 670
Target Start/End: Original strand, 10026675 - 10026723
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtatt 670  Q
    |||||||||||||||||||||||||  ||||||||||||| | ||||||    
T  10026675 catgcgcactggccaaacgttgttccccctgagaatcgaacccggtatt 10026723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 41220682 - 41220622
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| ||| |||||    
T  41220682 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgggtacgt 41220622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 42770710 - 42770770
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| ||||||||  ||||||||| ||| | |||||| |||||||||||    
T  42770710 catgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgt 42770770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 682
Target Start/End: Original strand, 19976859 - 19976926
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| |||||||||||| ||||||||| |||  ||||| ||||||| | |||||||| |||||||||    
T  19976859 gtagagacatgcgcactgaccaaacgttattccccctgaaaatcgaacccggtattccccggatacgt 19976926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 672
Target Start/End: Original strand, 18649085 - 18649135
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    ||||||||||| |||||  |||||| |||||||||||||||| ||||||||    
T  18649085 catgcgcactgcccaaatattgttcctcctgagaatcgaatccggtattcc 18649135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 682
Target Start/End: Original strand, 39806906 - 39807004
Alignment:
Q  584 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| |||||||| |||||  | |||||  |||||  ||||||||||||||||||||||||  || || |||||||| | |||||||| ||| |||||    
T  39806906 accaaaggtggatgactaatccgactcgtgtgtagaggcatgcgcactggccaaacgttgtttctcttgggaatcgaacccggtattccccgggtacgt 39807004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 682
Target Start/End: Complemental strand, 331597 - 331488
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||||||| ||||| |||||  | |||||  ||||| |  |||||| ||||||||||||||||  |||||||  |||| |||||||| | ||||||||    
T  331597 gtttccaacccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattcc 331498  T
Q  673 tcggatacgt 682  Q
     ||| |||||    
T  331497 ccgggtacgt 331488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 691
Target Start/End: Original strand, 25540403 - 25540532
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 661  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  |||||||  |||||  |||||||||||||||| ||||||||  |||  ||||||||    
T  25540403 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaa 25540502  T
Q  662 tctggtattcctcggatacgttcttagaat 691  Q
     |  ||||||| | ||||||| ||| ||||    
T  25540503 cccagtattccccagatacgtccttggaat 25540532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 675
Target Start/End: Original strand, 39201567 - 39201620
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcg 675  Q
    ||||| |||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  39201567 catgcacactggccaaacattgttccccctgagaatcgaattcggtattcctcg 39201620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 10823107 - 10823047
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| ||||| ||||| || | |||||||| ||| |||||    
T  10823107 catgcgcactggccaagcgttgttcctcctgggaatcaaacccggtattccccgggtacgt 10823047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 16034984 - 16034924
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| |||||| ||| ||||||||  ||||| ||||||| | ||||||||||||||||||    
T  16034984 catgcacactggtcaagcgttgttccgcctgaaaatcgaacccggtattcctcggatacgt 16034924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 41187896 - 41187836
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||| ||| |||||||  |||| ||||| ||||  ||||||||||||||||||    
T  41187896 catgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgt 41187836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 573 - 682
Target Start/End: Complemental strand, 29136009 - 29135900
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||||||| ||||| |||||| | |||||  ||||| |  |||||  ||||||||||||||||  |||||||  |||| |||||||||| ||||||||    
T  29136009 gtttccaacccaccaatggtggaagactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaatccggtattcc 29135910  T
Q  673 tcggatacgt 682  Q
     |||||||||    
T  29135909 ccggatacgt 29135900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 690
Target Start/End: Complemental strand, 41219635 - 41219572
Alignment:
Q  626 cgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 690  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||| || |||||| |||||||    
T  41219635 cgcactggccaaacgttgttcctcctgagaatcgaacttggtattcc-cgtatacgtccttagaa 41219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 682
Target Start/End: Complemental strand, 3755624 - 3755557
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| ||||||||||||| |||||||||||| ||||| ||||||||   |||||||| |||||||||    
T  3755624 gtagagacatgcgcactggtcaaacgttgttcctcctgggaatcgaagtcggtattccccggatacgt 3755557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 672
Target Start/End: Complemental strand, 928685 - 928597
Alignment:
Q  584 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    ||||| |||||||| |||||  |||||||  ||||   |||||||||||| |||  |||||||  ||||||||||||||||||||||||    
T  928685 accaaaggtggatgactaatccggctcgtgcgtagcggcatgcgcactggtcaagtgttgttccccctgagaatcgaatctggtattcc 928597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 51683014 - 51683074
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||| ||| ||||||||  |||| |||||||| |||||||||| |||||||||    
T  51683014 catgcgcactggtcaagcgttgttccccctgggaatcgaacctggtattccccggatacgt 51683074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 690
Target Start/End: Complemental strand, 10040652 - 10040536
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||||||| ||||| |||||| | | | |  |||||||  |||||  |||||||||||||||| ||||||||  ||||||||||||| | | ||||||    
T  10040652 gtttccaacccaccaaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgttgttc-ccctgagaatcgaacccgatattcc 10040554  T
Q  673 tcggatacgttcttagaa 690  Q
     ||| ||||| |||||||    
T  10040553 ccgggtacgtccttagaa 10040536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 671
Target Start/End: Original strand, 35923683 - 35923732
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattc 671  Q
    |||||||||||||||||||||||||  |||  |||||||| |||||||||    
T  35923683 catgcgcactggccaaacgttgttccccctatgaatcgaacctggtattc 35923732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 6462459 - 6462399
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| ||||||||  |||| |||||||| | |||||||| | |||||||    
T  6462459 catgcgcactggccaagcgttgttctccctgtgaatcgaacccggtattccccagatacgt 6462399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 690
Target Start/End: Complemental strand, 49082871 - 49082803
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 690  Q
    ||||||||||||| || ||||||||  |||| ||||||||   |||||||| ||||||||| |||||||    
T  49082871 catgcgcactggctaagcgttgttctccctgggaatcgaactcggtattccccggatacgtccttagaa 49082803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 6100523 - 6100463
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| |||||||||    
T  6100523 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgt 6100463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 679
Target Start/End: Complemental strand, 18374061 - 18374004
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggata 679  Q
    |||||||||||| ||| ||||||||  ||||||||||||| |||||||| | ||||||    
T  18374061 catgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttcccggata 18374004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 661
Target Start/End: Original strand, 68164 - 68196
Alignment:
Q  629 actggccaaacgttgttcgtcctgagaatcgaa 661  Q
    |||||||||||||||||| ||||||||||||||    
T  68164 actggccaaacgttgttcctcctgagaatcgaa 68196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 10927657 - 10927597
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| ||||  |||||||| | |||||||| ||| |||||    
T  10927657 catgcgcactggccaagcgttgttcctcctaggaatcgaacccggtattccccgggtacgt 10927597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 682
Target Start/End: Original strand, 45726486 - 45726553
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| |||| ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| |||||    
T  45726486 gtagagacatacgcactggccaaatgttattcctcctgagaatcgaaccaggtattcctcgggtacgt 45726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 684
Target Start/End: Complemental strand, 44969712 - 44969651
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttc 684  Q
    ||||| |||||||||| |||||||| |||||||||||||| |||||||| ||||| |||||||    
T  44969712 catgcacactggccaagcgttgttc-tcctgagaatcgaacctggtatttctcgggtacgttc 44969651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 672
Target Start/End: Original strand, 45361942 - 45361992
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 672  Q
    |||||||||||||||| |||||||| |||||||||||||| | ||||||||    
T  45361942 catgcgcactggccaagcgttgttcctcctgagaatcgaacccggtattcc 45361992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 5855570 - 5855510
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| || ||||||    
T  5855570 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgt 5855510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 16263593 - 16263533
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    |||||||||||||||| |||||||| |||||  ||||||| |||||||||| | |||||||    
T  16263593 catgcgcactggccaagcgttgttcctcctggaaatcgaacctggtattccccagatacgt 16263533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 676
Target Start/End: Complemental strand, 31734358 - 31734283
Alignment:
Q  600 taatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcgg 676  Q
    |||||||||||||| |||||  |||||||||||||||| |||||||   ||| |||||||||||  |||||||||||    
T  31734358 taatttggctcgtacgtagaggcatgcgcactggccaatcgttgtttcccct-agaatcgaatccagtattcctcgg 31734283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 682
Target Start/End: Original strand, 12744576 - 12744643
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| ||||||||||| | ||| ||||||||  ||||| ||||||||||| |||||||| |||||||    
T  12744576 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgt 12744643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 682
Target Start/End: Original strand, 12755566 - 12755633
Alignment:
Q  615 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||| ||||||||||| | ||| ||||||||  ||||| ||||||||||| |||||||| |||||||    
T  12755566 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgt 12755633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 691
Target Start/End: Complemental strand, 13265986 - 13265917
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaat 691  Q
    ||||||||||||| | ||||||||   |||  |||||||| | |||||||||||||||||| ||||||||    
T  13265986 catgcgcactggctagacgttgttttccctaggaatcgaaccaggtattcctcggatacgtccttagaat 13265917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 691
Target Start/End: Original strand, 34334355 - 34334424
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaat 691  Q
    ||||||||||||||||  |||||||  |||| |||||||| | |||||||| ||||||||| ||| ||||    
T  34334355 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaat 34334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 645
Target Start/End: Complemental strand, 2567373 - 2567301
Alignment:
Q  573 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgtt 645  Q
    |||||| ||| ||||| | |||| ||||||| || ||||| ||||||  |||||||||||||||| |||||||    
T  2567373 gtttccgacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgtt 2567301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 646
Target Start/End: Complemental strand, 8764099 - 8764015
Alignment:
Q  563 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttc 646  Q
    ||||||||||| ||||| ||| |||||||||||| | |||||  |||||||  |||||  ||||||||||||||||  |||||||    
T  8764099 ctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttc 8764015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 670
Target Start/End: Original strand, 33498899 - 33498947
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtatt 670  Q
    |||||||||||||||| ||||| || |||||||||||||| | ||||||    
T  33498899 catgcgcactggccaagcgttgctcctcctgagaatcgaacccggtatt 33498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 690
Target Start/End: Original strand, 41663916 - 41663984
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 690  Q
    ||||||||||| ||||  |||||||  |||| |||||||| | |||||||| ||||||||| |||||||    
T  41663916 catgcgcactgaccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttagaa 41663984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 690
Target Start/End: Complemental strand, 49078162 - 49078094
Alignment:
Q  622 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 690  Q
    ||||||||||||||||  ||||||   |||| |||||||| | |||||||| ||||||||| |||||||    
T  49078162 catgcgcactggccaagtgttgtttcccctgggaatcgaacccggtattccccggatacgtccttagaa 49078094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 680
Target Start/End: Complemental strand, 9933 - 9837
Alignment:
Q  584 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatac 680  Q
    ||||| |||||| | |||||  |||||||  |||||  |||||||||||||||| ||||||||  ||||  ||||||||| |||||||||| |||||    
T  9933 accaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatac 9837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 682
Target Start/End: Original strand, 8763 - 8820
Alignment:
Q  625 gcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 682  Q
    ||||||||||||| ||||||||  |||| |||||||| | |||||||||| |||||||    
T  8763 gcgcactggccaagcgttgttccccctgggaatcgaacccggtattcctctgatacgt 8820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University