View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755_high_12 (Length: 370)
Name: NF1755_high_12
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 34309081 - 34308743
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
34309081 |
ggaatgttgtagaaagaagaaaatttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgacccagagagtagatttcttaccgattatgg |
34308982 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34308981 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagtaggctgaggcatagtagaaatggtgtttgacgttgaagcttgcaaatt |
34308882 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34308881 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
34308782 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacct |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34308781 |
ttttgttcagaaaccgcaagattcgctgacttaggacct |
34308743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 4499535 - 4499194
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4499535 |
ggaatgttgtagaaagaagaaaaattttgcaaacagtgagtgatatgatcagttgctcctgagtctatgacccaaagagtagatttcttaccgattatgg |
4499436 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | || ||||||||||||||||||||||||| |
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|
| T |
4499435 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagcaggctgaggcatagtagcattggtgtttgacgttgaagcttgcaaatt |
4499336 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4499335 |
tgaatgttgtagaagctgcaaaatctgattatattgctcatggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
4499236 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4499235 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
4499194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 15823087 - 15822746
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
15823087 |
ggaatgttgtagaaagaagaaaaattttgcaaacagtgagtgatatgatcagttgctcctgagtctatgacccaaagagtagatttcttaccgattatgg |
15822988 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
15822987 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagcaggctgaggcatagtagcattggtgtttgacgttgaagcttgcaaatt |
15822888 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15822887 |
tgaatgttgtagaagctgcaaaatctgattatattgctcatggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
15822788 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15822787 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
15822746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 33765830 - 33765774
Alignment:
| Q |
204 |
tgaagcttgcaaatttgaatgttgtagaagctgcaaaatctgattatattgctcttg |
260 |
Q |
| |
|
||||||||| || ||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
33765830 |
tgaagcttgtaatgttgaatgttgtagaagctgtaaaatctgattatactgctcttg |
33765774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 26086117 - 26086458
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26086117 |
ggaatgttgtagaaagaagaaaaattttgcaaacagtgagtgatatgatcagttgctcctgagtctatgacccaaagagtagatttcttaccgattatgg |
26086216 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
26086217 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagcaggctgaggcatagtagcattggtgtttgacgttgaagcttgcaaatt |
26086316 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26086317 |
tgaatgttgtagaagctgcaaaatctgattatattgctcatggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
26086416 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26086417 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
26086458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 26109904 - 26110245
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26109904 |
ggaatgttgtagaaagaagaaaaattttgcaaacagtgagtgatttgatcagttgctcctgagtctatgacccaaagagtagatttcttaccgattatgg |
26110003 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
26110004 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagcaggctgaggtatagtagcattggtgtttgacgttgaagcttgcaaatt |
26110103 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26110104 |
tggatgttgtagaagctgcaaaatctgattatattgctcatggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
26110203 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26110204 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
26110245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 551706 - 552047
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
551706 |
ggaatgttgtagaaagaagaaaaattttgcaaacagtgagtgatatgatcagttgctcctgagtctatgacccaaagagtagatttcttaccgattatgg |
551805 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
551806 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagcaggctgaggcatagtagcattggtgtttgacgttgaagcttgcaaatt |
551905 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
551906 |
tgaatgttgtagaagctgcaaaatctgattatattgctcatggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
552005 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
552006 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
552047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 30282118 - 30282459
Alignment:
| Q |
19 |
ggaatgctgtagaaagaagaaattttttgcaaacagtgagtgatatgatcagttgctcctgagtctatgactcaaagagtagatttcttaccgattatgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30282118 |
ggaatgttgtagaaagaagaaaaattttgcaaacagtgagtgatatgatcagttgctcctgagtctatgacccaaagagtagatttcttaccgattatgg |
30282217 |
T |
|
| Q |
119 |
gagtggatgtggaagtataagttgcgggaagtgagataactgaatttacagtaggctgaggcatagtagaaatgatgtttgacgttgaagcttgcaaatt |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
30282218 |
gagtggatgtggaagtataagctgcgggaagtgagataactgaattgacagcaggctgaggcatagtagcattggtgtttgacgttgaagcttgcaaatt |
30282317 |
T |
|
| Q |
219 |
tgaatgttgtagaagctgcaaaatctgattatattgctcttggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30282318 |
tgaatgttgtagaagctgcaaaatctgattatattgctcatggatagaattcagtgaagggctgctaacagatccttggttctggacagcatcagtatac |
30282417 |
T |
|
| Q |
319 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30282418 |
ttttgttcagaaaccgcaagattcgctgacttaggacctttg |
30282459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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