View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755_high_15 (Length: 311)

Name: NF1755_high_15
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755_high_15
NF1755_high_15
[»] chr2 (3 HSPs)
chr2 (8-301)||(40092986-40093279)
chr2 (8-301)||(40062329-40062622)
chr2 (148-267)||(40080793-40080912)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 40092986 - 40093279
Alignment:
Q  8 agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092986 agggagagttgatgatggatgttccttctaaaaatgttcataatttattttttcaattaagttcttgaattattaaataataactttctatgatattatt 40093085  T
Q  108 gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093086 gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc 40093185  T
Q  208 tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcatt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093186 tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcatt 40093279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 40062329 - 40062622
Alignment:
Q  8 agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt 107  Q
    |||||||||||||  |||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  40062329 agggagagttgatcttggatgttccgtccaaaaatgttcataatttattgtttccattaagttcttgaattattaaattataactttcgatgatattatt 40062428  T
Q  108 gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc 207  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||| |||  ||| |||||| ||  ||||||||||||    
T  40062429 gatgaattcttagggagtcacaccgggaacaaagacaaacctaagcttaatgtggacatcccaatcaaagtaatttatggaaataaccaaattgatctgc 40062528  T
Q  208 tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcatt 301  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  40062529 tgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcatt 40062622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 40080793 - 40080912
Alignment:
Q  148 ctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtt 247  Q
    |||||||||||| ||||||||| ||| || |  |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40080793 ctaagcttaatgtggacatcccaatcgcactagtttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtt 40080892  T
Q  248 tttagtttccaattatgcat 267  Q
    ||||||||| || |||||||    
T  40080893 tttagtttctaaatatgcat 40080912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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