View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755_high_17 (Length: 285)
Name: NF1755_high_17
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 26991210 - 26990956
Alignment:
| Q |
20 |
cgaatatggttgctactgcccttgctaaacaggtttgnnnnnnnattcgcatatagaaaattttgatgaatgtgtttgtgaatgggtatcttgtattcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991210 |
cgaatatggttgctactgcccttgctaaacaggtttgtttttt-attcgcatatagaaaattttgatgaatgtgtttgtgaatgggtatcttgtattcaa |
26991112 |
T |
|
| Q |
120 |
atgtgagtggttagtctcacaccggttgaggatgagccaaactaatgatatagaataaagataattcatatggctaatgatcttaggttttgggtggaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991111 |
atgtgagtggttagtctcacaccggttgaggatgagccaaactaatgatatagaataaagataattcatatggctaatgatcttaggttttgggtggaaa |
26991012 |
T |
|
| Q |
220 |
tgtagtgttttggtctttgtagttcatgattggttaccttattgttgctccctatg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991011 |
tgtagtgttttggtctttgtagttcatgattggttaccttattgttgctccctatg |
26990956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 27005591 - 27005434
Alignment:
| Q |
74 |
agaaaattttgatgaatgtg--tttgtgaatgggtatcttgtattcaaatgtgagtggttagtctcacaccggttgaggatgagccaaactaatgatata |
171 |
Q |
| |
|
||||||| ||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||| |
|
|
| T |
27005591 |
agaaaatattgatgaatatgcatttgtgaacgggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaatgatata |
27005492 |
T |
|
| Q |
172 |
gaataaagataattcatatggctaatgatcttaggttttgggtggaaatgtagtgttt |
229 |
Q |
| |
|
||| | |||| |||||||||| ||||| ||| ||||||| ||||||||||| |||||| |
|
|
| T |
27005491 |
gaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgttt |
27005434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 27005656 - 27005620
Alignment:
| Q |
20 |
cgaatatggttgctactgcccttgctaaacaggtttg |
56 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27005656 |
cgaatatggttgctactgcccttgctaagcaggtttg |
27005620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 26976249 - 26976283
Alignment:
| Q |
20 |
cgaatatggttgctactgcccttgctaaacaggtt |
54 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26976249 |
cgaatatggttgctactgcacttgctaaacaggtt |
26976283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 26946278 - 26946246
Alignment:
| Q |
22 |
aatatggttgctactgcccttgctaaacaggtt |
54 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
26946278 |
aatatggttgctactgccctagctaaacaggtt |
26946246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University