View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_high_23 (Length: 248)
Name: NF1755_high_23
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 3563201 - 3563405
Alignment:
| Q |
28 |
gatgaaatgaagtttctgagtgcattgaacataaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatg |
127 |
Q |
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| T |
3563201 |
gatgaaatgaagtttctgagtgcattgaacataaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatg |
3563300 |
T |
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| Q |
128 |
cattaatctccaagcaagcagagacttggacggaggaatatccttgcaccaaattgtagaggcccaatgcttctttgttcctggagttttcttgaaagca |
227 |
Q |
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| T |
3563301 |
cattaatctccaagaaagcagagacttggacggaggaatatccttgcaccaaattgtagaggcccaatgcttctttgttcctggagttttcttgaaagca |
3563400 |
T |
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| Q |
228 |
tatgc |
232 |
Q |
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||||| |
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| T |
3563401 |
tatgc |
3563405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 9749488 - 9749614
Alignment:
| Q |
67 |
acatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaat |
166 |
Q |
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| T |
9749488 |
acatagatggaatgttgcaacccatttccatgagtttttcatcgatgagtactttatcatgcattaatctccaagctagaagagatttttatgggggtat |
9749587 |
T |
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| Q |
167 |
atccttgcaccaaattgtagaggccca |
193 |
Q |
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| T |
9749588 |
atccttacaccaaattgttgatgccca |
9749614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 12053842 - 12053963
Alignment:
| Q |
60 |
aaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacg |
159 |
Q |
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| T |
12053842 |
aaagagcacattgatgggagattgcagcctctttgcttcagcttatcatcaataggcattttgtcatgaagtaatctccaagcaatcagagatttagaag |
12053941 |
T |
|
| Q |
160 |
gaggaatatccttgcaccaaat |
181 |
Q |
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|||| ||||| |||||||||| |
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| T |
12053942 |
gaggtatatcaatgcaccaaat |
12053963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 14169886 - 14170022
Alignment:
| Q |
66 |
cacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaa |
165 |
Q |
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||||| |||||||| || ||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||||| |
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| T |
14169886 |
cacattgatggaaggttgcatcctctttccatgagtttttcatctgttggaactttgtcatgcattaatctccaagctagcagagatttgaatggaggaa |
14169985 |
T |
|
| Q |
166 |
tatccttgcaccaaattgtagaggcccaatgcttctt |
202 |
Q |
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| T |
14169986 |
tatccttgcaccaaattgtagaggcccaatgtttctt |
14170022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 30254104 - 30254141
Alignment:
| Q |
102 |
ttttcatcagtgggaaccttgtcatgcattaatctcca |
139 |
Q |
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||||||||||| ||||||||||||||||| |||||||| |
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| T |
30254104 |
ttttcatcagttggaaccttgtcatgcatcaatctcca |
30254141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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