View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755_high_7 (Length: 492)
Name: NF1755_high_7
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 38645867 - 38645416
Alignment:
| Q |
13 |
aaaataaactacagggactagtgccaaaatatggtaaaagtgtaggaactaatgacatatttaagtcttaatttaatcgtcttttcctattatttattta |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
38645867 |
aaaataaactacaaggactagtgccaaaatacggtaaaagtgtaggaactaatgacatatttaagtcttaatttaatcgtctttttccatgatttattta |
38645768 |
T |
|
| Q |
113 |
tctcttaatattagtttccaactatttggtgcaatgctcatgtaaagagatcttaacctcttttctagtactagtacaagtacaagtactactaaaatta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
38645767 |
tctcttaatattagtttccaactatttggtgcaatgctcatgtaaagagatcttaacctctttcctagtactagtacaagtac------tactaaaatta |
38645674 |
T |
|
| Q |
213 |
atttctttcatttaagcctgtggaagcaattttgtcaacctatattttatgatttgaataattcagattcacgattagcttctctctatatagagagtac |
312 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38645673 |
atttctttcatttaagcttgtggaagcaactttgtcaacctatattttatgatttgaataattcagattcacgattagcttctctctatatagagagtac |
38645574 |
T |
|
| Q |
313 |
tcacgtgaatatcctagcaagtagtacctgtgtgagccattatttgataattatctaccatgaatgtgatgaattatgagcaatttgattactcattcac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38645573 |
tcacgtgaatatcctagcaagtagtacctgtgtgagccattatttgataattatctaccatgaatgtgatgaattatgagcaatttgattactcattca- |
38645475 |
T |
|
| Q |
413 |
ccctccttacatgaaccagctgcatgagtgtaccttagaaaatttatcaccactcccagcagaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38645474 |
-----cttacatgaaccagctgcatgagtgtaccttagaaaatttatcaccactcccagcagaa |
38645416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 112 - 476
Target Start/End: Original strand, 38898745 - 38899088
Alignment:
| Q |
112 |
atctcttaatattagtttccaactatttggtgcaatgctcatgtaaagagatcttaacctcttttctagtactagtacaagtacaagtactactaaaatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||| ||||||||||| |
|
|
| T |
38898745 |
atctcttaatattagtttccaactatttggtgcaatgctcatgtaaa-agatcttaacctctttcctggtactagtactagta------ctactaaaatt |
38898837 |
T |
|
| Q |
212 |
aatttctttcatttaagcctgtggaagcaattttgtcaacctatattttatgatttgaataattcagattcacgattagcttctctctatatagagagta |
311 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
38898838 |
tatttctttcatttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagcttccctctatataaagagta |
38898937 |
T |
|
| Q |
312 |
ctcacgtgaatatcctagcaagtagtacctgtgtgagccattatttgataattatctaccatgaatgtgatgaattatgagcaatttgattactcattca |
411 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38898938 |
ctcacataaatattctagcaagtagtacctg--------------tcataattatctaccatgaatgtgatggattatgagcaatttgattactcattca |
38899023 |
T |
|
| Q |
412 |
cccctccttacatgaaccagctgcatgagtgtaccttagaaaatttatcaccactcccagcagaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
38899024 |
cccctccttacatgaaccagctgcatgagtgtagcttagaaaatttatcaccactccaagcagaa |
38899088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 45050773 - 45050818
Alignment:
| Q |
34 |
tgccaaaatatggtaaaagtgtaggaactaatgacatatttaagtc |
79 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
45050773 |
tgccaaaatatggtaaaagtgcagggacgaatgacatatttaagtc |
45050818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 30560669 - 30560720
Alignment:
| Q |
34 |
tgccaaaatatggtaaaagtgtaggaactaatgacatatttaagtcttaatt |
85 |
Q |
| |
|
|||||||||||| | |||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
30560669 |
tgccaaaatatgatgaaagtgcaggaactaaagacatatttaagccttaatt |
30560720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 49148212 - 49148169
Alignment:
| Q |
34 |
tgccaaaatatggtaaaagtgtaggaactaatgacatatttaag |
77 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
49148212 |
tgccaaaatatggtgaaagtgcagggactaatgacatatttaag |
49148169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 44098776 - 44098818
Alignment:
| Q |
34 |
tgccaaaatatggtaaaagtgtaggaactaatgacatatttaa |
76 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
44098776 |
tgccaaaatatggtgaaagtgcagggactaatgacatatttaa |
44098818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 9177218 - 9177276
Alignment:
| Q |
25 |
agggactagtgccaaaatatggtaaaagtgtaggaactaatgacatatttaagtcttaa |
83 |
Q |
| |
|
|||||| | |||||||||||| | |||||| ||||||||| || ||||||||||||||| |
|
|
| T |
9177218 |
agggaccaatgccaaaatatgatgaaagtgcaggaactaaagatatatttaagtcttaa |
9177276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 18673965 - 18673913
Alignment:
| Q |
24 |
cagggactagtgccaaaatatggtaaaagtgtaggaactaatgacatatttaa |
76 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||| || ||||||| |||||| |
|
|
| T |
18673965 |
cagggacgaatgccaaaatatgataaaagtgtagggaccaatgacacatttaa |
18673913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 39093119 - 39093069
Alignment:
| Q |
27 |
ggactagtgccaaaatatggtaaaagtgtaggaactaatgacatatttaag |
77 |
Q |
| |
|
|||||| || ||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
39093119 |
ggactaatgtcaaaatatggtcaaagtgcagggactaatgacatatttaag |
39093069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University