View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_10 (Length: 442)
Name: NF1755_low_10
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 1629944 - 1630353
Alignment:
| Q |
19 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagt |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
1629944 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagt |
1630043 |
T |
|
| Q |
115 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctg |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630044 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctg |
1630143 |
T |
|
| Q |
215 |
ttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattgtcattatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1630144 |
ttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatg |
1630243 |
T |
|
| Q |
315 |
aacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630244 |
aacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgc |
1630343 |
T |
|
| Q |
415 |
acagtcttgt |
424 |
Q |
| |
|
|||||||||| |
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|
| T |
1630344 |
acagtcttgt |
1630353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 188 - 424
Target Start/End: Original strand, 1624142 - 1624378
Alignment:
| Q |
188 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
287 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
288 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624242 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1624341 |
T |
|
| Q |
388 |
ttagcagcagcatttaaagcagcttgcacagtcttgt |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624342 |
ttagcagcagcatttaaagcagcttgcacagtcttgt |
1624378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 188 - 424
Target Start/End: Original strand, 1607121 - 1607357
Alignment:
| Q |
188 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
287 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
288 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607221 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1607320 |
T |
|
| Q |
388 |
ttagcagcagcatttaaagcagcttgcacagtcttgt |
424 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1607321 |
ttagcagcagcatttaaagcagcctgcacagtcttgt |
1607357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 190 - 424
Target Start/End: Complemental strand, 10820160 - 10819926
Alignment:
| Q |
190 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcac |
289 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
290 |
caaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
389 |
Q |
| |
|
| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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|
| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
10819961 |
T |
|
| Q |
390 |
agcagcagcatttaaagcagcttgcacagtcttgt |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgt |
10819926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 10820754 - 10820598
Alignment:
| Q |
19 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||| ||| ||||| |
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|
| T |
10820754 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataa |
10820659 |
T |
|
| Q |
119 |
tttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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|
| T |
10820658 |
tttaaatattataaacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 1606646 - 1606689
Alignment:
| Q |
19 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606646 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 199 - 424
Target Start/End: Original strand, 18785179 - 18785404
Alignment:
| Q |
199 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagca |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
299 |
taatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
398 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
|
| Q |
399 |
atttaaagcagcttgcacagtcttgt |
424 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
18785379 |
atttagagcagcttgcacagtcttgt |
18785404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 413
Target Start/End: Original strand, 12803384 - 12803590
Alignment:
| Q |
207 |
acctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattg |
306 |
Q |
| |
|
|||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||| | |||||| | |||||||| |||| ||||||||| |
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|
| T |
12803384 |
acctgcagtggcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatatta |
12803483 |
T |
|
| Q |
307 |
tcatt-atgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaa |
405 |
Q |
| |
|
||||| || | ||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| | |
|
|
| T |
12803484 |
tcattcatcttcc-caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttata |
12803582 |
T |
|
| Q |
406 |
gcagcttg |
413 |
Q |
| |
|
||| |||| |
|
|
| T |
12803583 |
gcatcttg |
12803590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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