View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_11 (Length: 426)
Name: NF1755_low_11
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 33456397 - 33456765
Alignment:
| Q |
18 |
ctttcgttgtcgttatcgtcttcgttacaacatcatcattcagaggatttaagaatgggagatgctgctgctggtggttttctatattacaatcaaggag |
117 |
Q |
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| T |
33456397 |
ctttcgttgtcgttatcgtcttccttacaacatcatcattcagaggatttaagaatgggagatgctgctgctggtggttttctatattacaatcaaggag |
33456496 |
T |
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| Q |
118 |
gaccaggaacttcttacaagaatcttggtagtgttcatcatcatcatttacaaggaggtggattaggacagattaatcatattcatcaaggacatgttgg |
217 |
Q |
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| T |
33456497 |
gaccaggaacttcttacaagaatcttggtagtgttcatcatcatcatttacaaggaggtggattaggacagattaatcatattcatcaaggacatgttgg |
33456596 |
T |
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| Q |
218 |
atttggttca------tcttcttcttctttaggtgttgttaatgtgttgaggaattcaaaatattttaaagctgctcaagaattgttggaagagttttgt |
311 |
Q |
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| T |
33456597 |
atttggttcatcttcttcttcttcttctttaggtgttgttaatgtgttgaggaattcaaaatatgttaaagctgctcaagaattgttggaagagttttgc |
33456696 |
T |
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| Q |
312 |
agtgttggaaggggtcaattcaagaagaataaatttagtagacaattatcaaaccctaattcaaatcaa |
380 |
Q |
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| T |
33456697 |
agtgttggaaggggtcaattcaagaagaataaatttagtagacaattatcaaaccctaattcaaatcaa |
33456765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 7066368 - 7066304
Alignment:
| Q |
264 |
aattcaaaatattttaaagctgctcaagaattgttggaagagttttgtagtgttggaaggggtca |
328 |
Q |
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| T |
7066368 |
aattcaaaatatatgaaacctactcaagaattgcttcaagagttttgcagtgttggaaggggtca |
7066304 |
T |
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