View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_17 (Length: 311)
Name: NF1755_low_17
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 40092986 - 40093279
Alignment:
| Q |
8 |
agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt |
107 |
Q |
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| T |
40092986 |
agggagagttgatgatggatgttccttctaaaaatgttcataatttattttttcaattaagttcttgaattattaaataataactttctatgatattatt |
40093085 |
T |
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| Q |
108 |
gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc |
207 |
Q |
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| T |
40093086 |
gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc |
40093185 |
T |
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| Q |
208 |
tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcatt |
301 |
Q |
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| T |
40093186 |
tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcatt |
40093279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 40062329 - 40062622
Alignment:
| Q |
8 |
agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt |
107 |
Q |
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| T |
40062329 |
agggagagttgatcttggatgttccgtccaaaaatgttcataatttattgtttccattaagttcttgaattattaaattataactttcgatgatattatt |
40062428 |
T |
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| Q |
108 |
gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc |
207 |
Q |
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| T |
40062429 |
gatgaattcttagggagtcacaccgggaacaaagacaaacctaagcttaatgtggacatcccaatcaaagtaatttatggaaataaccaaattgatctgc |
40062528 |
T |
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| Q |
208 |
tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcatt |
301 |
Q |
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| T |
40062529 |
tgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcatt |
40062622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 40080793 - 40080912
Alignment:
| Q |
148 |
ctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtt |
247 |
Q |
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| T |
40080793 |
ctaagcttaatgtggacatcccaatcgcactagtttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtt |
40080892 |
T |
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| Q |
248 |
tttagtttccaattatgcat |
267 |
Q |
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| T |
40080893 |
tttagtttctaaatatgcat |
40080912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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