View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_20 (Length: 281)
Name: NF1755_low_20
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 40012563 - 40012300
Alignment:
| Q |
1 |
atttacctccctccaagaagacactacaacataattatgattcatgtagactaatttatgatttgaaatattatctgatcatgttaatccttcatatata |
100 |
Q |
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| T |
40012563 |
atttacctccctccaagaagacactacaacataattatgattcatgtagactaatttatgatttgaaatattatctgatcatgttaatccttcatatata |
40012464 |
T |
|
| Q |
101 |
nnnnnnnnn--aaatcttaaatatataccaaaatataaacatagctctccaaaaccctcccatccgaaatcctcagtctgaaatctaaaataccctaaac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40012463 |
tatatttttttaaatcttaaatatataccaaaatataaacatagctctccaaaaccctcccatccgaaatcctcagtctgaaatctaaaataccctaaac |
40012364 |
T |
|
| Q |
199 |
gtaatttatgtttcagaaacaaatcacctgctttgaaactttctgtgatccttggaattgtaca |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40012363 |
ataatttatgtttcagaaacaaatcacctgctttgaaactttctgtgatccttggaattgtaca |
40012300 |
T |
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