View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_22 (Length: 258)
Name: NF1755_low_22
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 29500821 - 29500594
Alignment:
| Q |
19 |
tgttctacggcttaaagcttgaaaggacaaaaatggaaaataactgtcaagcgatggtggaggaggagatgtagggatcgttctatactcagatggtcgg |
118 |
Q |
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| T |
29500821 |
tgttctacggcttgaagcttgaaaggacaaatatggaaaataactgtcaagcgatggtggaggaggagatgtagggatcgttctatactcagatggtcgt |
29500722 |
T |
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| Q |
119 |
gcaagaaaggaagaatgaaaaataaaatgttgataataatatatggttttgattgggtgagagaaattgaat-ttttatagaagaaaaaatggattatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29500721 |
gcaagaaaggaagaatgaaaaataaaatgttgataataatatatggttttgattgggtgagagaaattgaattttttatagaagaaaaaatggattatgg |
29500622 |
T |
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| Q |
218 |
aaggtgaaattgtgaattgggagaataa |
245 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
29500621 |
aaggtaaaattgtgaattgggagaataa |
29500594 |
T |
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